Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DESOR_RS27000 Genome accession   NC_016584
Coordinates   5835624..5836031 (-) Length   135 a.a.
NCBI ID   WP_014187774.1    Uniprot ID   -
Organism   Desulfosporosinus orientis DSM 765     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5810668..5842018 5835624..5836031 within 0


Gene organization within MGE regions


Location: 5810668..5842018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESOR_RS26870 (Desor_5583) istB 5810668..5811447 (-) 780 WP_014184041.1 IS21-like element helper ATPase IstB -
  DESOR_RS26875 (Desor_5584) istA 5811444..5812685 (-) 1242 WP_014184040.1 IS21 family transposase -
  DESOR_RS26880 (Desor_5585) - 5812855..5813784 (+) 930 WP_242832560.1 cell wall-binding repeat-containing protein -
  DESOR_RS30490 (Desor_5586) - 5813744..5814043 (+) 300 WP_242832416.1 hypothetical protein -
  DESOR_RS26890 (Desor_5587) - 5814549..5814992 (+) 444 WP_014187758.1 hypothetical protein -
  DESOR_RS26895 (Desor_5588) - 5815002..5815745 (+) 744 WP_014187759.1 3'-5' exonuclease -
  DESOR_RS29930 (Desor_5589) - 5815852..5816220 (+) 369 WP_014187760.1 hypothetical protein -
  DESOR_RS26905 (Desor_5590) - 5816427..5817143 (+) 717 WP_014187761.1 hypothetical protein -
  DESOR_RS26915 (Desor_5592) istB 5817597..5818337 (-) 741 WP_014183191.1 IS21-like element helper ATPase IstB -
  DESOR_RS26920 (Desor_5593) istA 5818330..5819841 (-) 1512 WP_014183190.1 IS21 family transposase -
  DESOR_RS26925 (Desor_5594) - 5820623..5821603 (-) 981 WP_014187763.1 Abi family protein -
  DESOR_RS30785 - 5821727..5821855 (-) 129 WP_282434393.1 hypothetical protein -
  DESOR_RS26935 (Desor_5597) - 5822285..5822920 (-) 636 WP_242832417.1 PhoH family protein -
  DESOR_RS26950 (Desor_5600) - 5823604..5825385 (-) 1782 WP_014187765.1 methyl-accepting chemotaxis protein -
  DESOR_RS26955 (Desor_5602) - 5825815..5827098 (-) 1284 WP_014187766.1 adenylosuccinate synthase -
  DESOR_RS26960 (Desor_5603) purB 5827124..5828422 (-) 1299 WP_014187767.1 adenylosuccinate lyase -
  DESOR_RS26965 (Desor_5604) - 5828469..5829881 (-) 1413 WP_014187768.1 FAD-dependent protein -
  DESOR_RS26970 (Desor_5605) dnaB 5830078..5831412 (-) 1335 WP_014187769.1 replicative DNA helicase -
  DESOR_RS26975 (Desor_5606) lonC 5831456..5833354 (-) 1899 WP_014187770.1 Lon family ATP-dependent protease -
  DESOR_RS26980 (Desor_5607) rplI 5833431..5833880 (-) 450 WP_014187771.1 50S ribosomal protein L9 -
  DESOR_RS26985 (Desor_5608) - 5833896..5834831 (-) 936 WP_014187772.1 DUF2232 domain-containing protein -
  DESOR_RS26990 (Desor_5609) - 5834857..5835159 (-) 303 WP_042331747.1 MazG-like family protein -
  DESOR_RS26995 (Desor_5610) rpsR 5835375..5835605 (-) 231 WP_014187773.1 30S ribosomal protein S18 -
  DESOR_RS27000 (Desor_5611) ssbA 5835624..5836031 (-) 408 WP_014187774.1 single-stranded DNA-binding protein Machinery gene
  DESOR_RS27005 (Desor_5612) rpsF 5836051..5836338 (-) 288 WP_014187775.1 30S ribosomal protein S6 -
  DESOR_RS27010 (Desor_5613) ychF 5836466..5837566 (-) 1101 WP_014187776.1 redox-regulated ATPase YchF -
  DESOR_RS27015 (Desor_5614) - 5837646..5837840 (-) 195 WP_014187777.1 DUF951 domain-containing protein -
  DESOR_RS27020 (Desor_5615) - 5837880..5838752 (-) 873 WP_014187778.1 mechanosensitive ion channel family protein -
  DESOR_RS27025 (Desor_5616) - 5838779..5840155 (-) 1377 WP_014187779.1 aminopeptidase -
  DESOR_RS27030 (Desor_5617) - 5840241..5840978 (-) 738 WP_014187780.1 CvpA family protein -
  DESOR_RS30790 (Desor_5618) - 5841443..5841574 (+) 132 WP_014187781.1 hypothetical protein -
  DESOR_RS27035 (Desor_5619) - 5841587..5842018 (-) 432 WP_014187782.1 DUF2889 domain-containing protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15054.83 Da        Isoelectric Point: 5.8945

>NTDB_id=42866 DESOR_RS27000 WP_014187774.1 5835624..5836031(-) (ssbA) [Desulfosporosinus orientis DSM 765]
MLNRVVLIGRLTKDPELRYTPNGVAVANFTLAVDRNYKNAQGERDTDFINIVVYRQLAELCANYLAKGKLAATDGRIQVR
SYTGQDGQKRWVTEVIAEDVRFLSPKDSGSGSESRPFSGNNSFGHEVNLDDDIPF

Nucleotide


Download         Length: 408 bp        

>NTDB_id=42866 DESOR_RS27000 WP_014187774.1 5835624..5836031(-) (ssbA) [Desulfosporosinus orientis DSM 765]
ATGTTAAATCGTGTCGTTTTGATTGGCCGTTTGACGAAGGACCCCGAATTACGTTATACGCCAAACGGTGTAGCTGTCGC
CAATTTCACATTGGCGGTTGATCGTAATTATAAGAATGCTCAAGGGGAAAGAGATACGGATTTTATTAACATTGTAGTAT
ATCGGCAGCTGGCAGAATTATGTGCTAATTACTTAGCGAAGGGAAAACTGGCTGCTACAGATGGACGAATTCAAGTGCGT
TCTTATACGGGACAAGACGGTCAAAAACGCTGGGTTACAGAGGTTATTGCTGAAGATGTTCGCTTTTTAAGTCCGAAGGA
CAGTGGAAGCGGCTCAGAATCCAGACCTTTCAGCGGAAATAATTCTTTTGGACATGAAGTAAATTTGGATGATGACATCC
CATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.421

79.259

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.802

97.037

0.444
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

78.519

0.422
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.259

100

0.393
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.519

100

0.385
  ssbB/cilA Streptococcus mitis NCTC 12261

37.778

100

0.378
  ssbB/cilA Streptococcus mitis SK321

37.778

100

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

37.778

100

0.378
  ssbB/cilA Streptococcus pneumoniae D39

37.778

100

0.378
  ssbB/cilA Streptococcus pneumoniae R6

37.778

100

0.378
  ssb Neisseria gonorrhoeae MS11

44.643

82.963

0.37
  ssb Neisseria meningitidis MC58

44.643

82.963

0.37
  ssbA Streptococcus mutans UA159

37.037

100

0.37

Multiple sequence alignment