Detailed information NTG0042224

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KO11_RS09705
• Genome accession: NC_017660
• Coordinates: 1973081..1974073 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli KO11FL
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1968081..1979073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KO11_RS09675 (KO11_09240)	ispD	1968142..1968852 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KO11_RS09680 (KO11_09245)	ispF	1968852..1969331 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KO11_RS09685 (KO11_09250)	truD	1969328..1970377 (+)	1050	WP_000568949.1	tRNA pseudouridine(13) synthase TruD	-
KO11_RS09690 (KO11_09255)	surE	1970358..1971119 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
KO11_RS09695 (KO11_09260)	pcm	1971113..1971739 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KO11_RS09700 (KO11_09265)	nlpD	1971924..1973018 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KO11_RS09705 (KO11_09270)	rpoS	1973081..1974073 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KO11_RS09710 (KO11_09275)	-	1974194..1974601 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
KO11_RS09715 (KO11_09280)	-	1974748..1975341 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
KO11_RS09720 (KO11_09285)	-	1975341..1976768 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
KO11_RS09725 (KO11_09290)	-	1976779..1977015 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
KO11_RS09730 (KO11_09295)	ygbN	1977054..1978418 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=42224 KO11_RS09705 WP_000081550.1 1973081..1974073(+) (rpoS) [Escherichia coli KO11FL]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=42224 KO11_RS09705 WP_000081550.1 1973081..1974073(+) (rpoS) [Escherichia coli KO11FL]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715