Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PARA_RS00550 Genome accession   NC_015964
Coordinates   105961..106638 (+) Length   225 a.a.
NCBI ID   WP_014064063.1    Uniprot ID   A0AB33QJ83
Organism   Haemophilus parainfluenzae T3T1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100961..111638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS00525 (PARA_01060) rppH 101119..101712 (-) 594 WP_014064058.1 RNA pyrophosphohydrolase -
  PARA_RS00530 (PARA_01070) ampD 102197..102760 (-) 564 WP_014064059.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PARA_RS00535 (PARA_01080) pilA 102903..103346 (+) 444 WP_014064060.1 prepilin peptidase-dependent pilin Machinery gene
  PARA_RS00540 (PARA_01090) pilB 103353..104732 (+) 1380 WP_014064061.1 GspE/PulE family protein Machinery gene
  PARA_RS00545 (PARA_01100) pilC 104741..105964 (+) 1224 WP_014064062.1 type II secretion system F family protein Machinery gene
  PARA_RS00550 (PARA_01110) pilD 105961..106638 (+) 678 WP_014064063.1 prepilin peptidase Machinery gene
  PARA_RS00555 (PARA_01120) coaE 106727..107347 (+) 621 WP_014064064.1 dephospho-CoA kinase -
  PARA_RS00560 (PARA_01130) yacG 107340..107546 (+) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  PARA_RS00565 (PARA_01140) - 107543..107824 (+) 282 WP_014064065.1 GNAT family N-acetyltransferase -
  PARA_RS00570 (PARA_01150) rhlB 107914..109173 (+) 1260 WP_014064066.1 ATP-dependent RNA helicase RhlB -
  PARA_RS00575 (PARA_01160) mreD 109214..109702 (-) 489 WP_014064067.1 rod shape-determining protein MreD -
  PARA_RS00580 (PARA_01170) mreC 109702..110766 (-) 1065 WP_014064068.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25944.79 Da        Isoelectric Point: 6.4714

>NTDB_id=42227 PARA_RS00550 WP_014064063.1 105961..106638(+) (pilD) [Haemophilus parainfluenzae T3T1]
MITLAFFLLGGLAGILAWLYIDRFIPNLQQEIYQNYIELYPENRHLFHSEKAAIQSQKCGHIFLYFLGFGLCFAVLCYFL
QDELFTLWLTITLSLLFVISWLDWHYQLISPTPCLLLFFLGLFGSQQEFSVLTLSQSLESAVSFFGVFYIIYHLSKWFYK
KEALGRGDYWLALGIGAYLTIAHLPLFLFIACLLGIIGYWISRQPVLPFAPFLCLSLIITSAINL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=42227 PARA_RS00550 WP_014064063.1 105961..106638(+) (pilD) [Haemophilus parainfluenzae T3T1]
GTGATAACATTAGCCTTTTTCTTATTGGGTGGTTTAGCGGGCATCCTTGCTTGGCTTTATATTGATCGTTTTATCCCCAA
TCTCCAACAAGAAATTTATCAGAATTATATCGAACTTTATCCTGAAAATAGGCACCTGTTTCACAGCGAAAAAGCAGCCA
TTCAATCTCAAAAGTGCGGTCATATTTTCCTTTATTTTTTAGGGTTTGGACTCTGTTTTGCTGTACTCTGTTATTTTCTT
CAGGATGAATTATTTACTTTATGGCTCACAATTACGCTTAGCTTACTTTTTGTTATCAGTTGGCTAGACTGGCATTATCA
ACTGATTTCACCTACACCTTGCCTACTTTTATTTTTTCTAGGTTTATTTGGTTCGCAGCAAGAATTTTCCGTTCTAACCC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCGGTGTTTTTTATATCATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCGTTAGGCCGTGGCGATTATTGGCTCGCTTTAGGAATCGGCGCTTATCTCACCATCGCACACTTACCACTTTT
CTTATTCATTGCCTGTCTATTAGGCATCATAGGTTATTGGATTTCTCGTCAGCCCGTTTTACCTTTCGCGCCCTTTCTTT
GCTTATCGTTAATCATCACCAGTGCAATCAACCTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

52.941

98.222

0.52
  pilD Haemophilus influenzae 86-028NP

52.036

98.222

0.511

Multiple sequence alignment