Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPPN_RS08845 Genome accession   NC_015875
Coordinates   1722216..1722638 (-) Length   140 a.a.
NCBI ID   WP_000609572.1    Uniprot ID   A0AAW4C9A4
Organism   Streptococcus pseudopneumoniae IS7493     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1714844..1742493 1722216..1722638 within 0


Gene organization within MGE regions


Location: 1714844..1742493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS08805 (SPPN_08955) - 1714844..1715356 (-) 513 WP_001088680.1 DUF2812 domain-containing protein -
  SPPN_RS08815 (SPPN_08965) hsdR 1715963..1718296 (+) 2334 WP_000229093.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  SPPN_RS08820 (SPPN_08970) - 1718309..1719772 (+) 1464 WP_000029046.1 HsdM family class I SAM-dependent methyltransferase -
  SPPN_RS08825 (SPPN_08980) - 1719772..1720501 (+) 730 Protein_1779 restriction endonuclease subunit S -
  SPPN_RS08830 (SPPN_08985) psrA 1720570..1721367 (+) 798 WP_000657448.1 tyrosine-type DNA invertase PsrA -
  SPPN_RS08835 (SPPN_08990) - 1721438..1721851 (-) 414 WP_138699295.1 hypothetical protein -
  SPPN_RS14045 - 1722000..1722203 (-) 204 Protein_1782 helix-turn-helix domain-containing protein -
  SPPN_RS08845 (SPPN_09000) ssb 1722216..1722638 (-) 423 WP_000609572.1 single-stranded DNA-binding protein Machinery gene
  SPPN_RS08850 (SPPN_09005) - 1722642..1723265 (-) 624 WP_000163473.1 ERF family protein -
  SPPN_RS08855 (SPPN_09010) - 1723276..1723749 (-) 474 WP_000224405.1 siphovirus Gp157 family protein -
  SPPN_RS13500 (SPPN_09015) - 1723877..1724053 (-) 177 WP_000613912.1 hypothetical protein -
  SPPN_RS08860 (SPPN_09030) - 1724274..1724621 (-) 348 WP_000462836.1 hypothetical protein -
  SPPN_RS08865 (SPPN_09035) - 1724621..1724878 (-) 258 WP_000608473.1 hypothetical protein -
  SPPN_RS08870 (SPPN_09040) - 1724966..1725232 (-) 267 WP_000450963.1 hypothetical protein -
  SPPN_RS08875 (SPPN_09045) - 1725429..1725590 (+) 162 WP_237701456.1 hypothetical protein -
  SPPN_RS13505 (SPPN_09050) - 1725583..1725753 (-) 171 WP_000656630.1 hypothetical protein -
  SPPN_RS13510 (SPPN_09055) - 1725750..1725893 (-) 144 WP_000389575.1 hypothetical protein -
  SPPN_RS08880 (SPPN_09060) - 1726011..1726229 (+) 219 WP_000088810.1 hypothetical protein -
  SPPN_RS13515 (SPPN_09065) - 1726354..1726521 (-) 168 WP_000152772.1 hypothetical protein -
  SPPN_RS08885 (SPPN_09070) - 1726511..1727365 (-) 855 WP_001203053.1 ATP-binding protein -
  SPPN_RS08890 (SPPN_09075) - 1727375..1728217 (-) 843 WP_000236631.1 replication initiator protein A -
  SPPN_RS08895 (SPPN_09080) - 1728257..1728469 (-) 213 WP_001169630.1 helix-turn-helix transcriptional regulator -
  SPPN_RS08900 (SPPN_09085) - 1728482..1728667 (-) 186 WP_000263488.1 helix-turn-helix domain-containing protein -
  SPPN_RS08905 (SPPN_09090) - 1728816..1729040 (+) 225 WP_000040990.1 hypothetical protein -
  SPPN_RS08910 (SPPN_09095) - 1729215..1729925 (+) 711 WP_000006951.1 DUF4145 domain-containing protein -
  SPPN_RS14225 (SPPN_09100) - 1729922..1730053 (-) 132 WP_000446473.1 hypothetical protein -
  SPPN_RS13520 (SPPN_09105) - 1730223..1730366 (-) 144 WP_000969964.1 hypothetical protein -
  SPPN_RS08915 (SPPN_09110) - 1730439..1730714 (-) 276 WP_001094379.1 hypothetical protein -
  SPPN_RS08920 (SPPN_09115) - 1730884..1731639 (+) 756 WP_000377627.1 S24 family peptidase -
  SPPN_RS08925 (SPPN_09120) - 1731640..1732404 (+) 765 WP_000155204.1 type II toxin-antitoxin system PemK/MazF family toxin -
  SPPN_RS08930 (SPPN_09130) - 1733026..1734153 (+) 1128 WP_000266843.1 tyrosine-type recombinase/integrase -
  SPPN_RS11435 (SPPN_09135) - 1734248..1734460 (-) 213 Protein_1807 IS630 family transposase -
  SPPN_RS12335 (SPPN_09140) - 1734479..1734646 (+) 168 WP_007285044.1 choline-binding protein A -
  SPPN_RS08940 (SPPN_09145) - 1734872..1735165 (+) 294 Protein_1809 ATP-binding cassette domain-containing protein -
  SPPN_RS08945 (SPPN_09150) - 1735350..1735724 (+) 375 WP_000781328.1 CidA/LrgA family protein -
  SPPN_RS08950 (SPPN_09155) - 1735721..1736416 (+) 696 WP_001288944.1 LrgB family protein -
  SPPN_RS08955 (SPPN_09160) - 1737362..1738561 (-) 1200 WP_000528826.1 ABC transporter permease -
  SPPN_RS08960 (SPPN_09165) - 1738540..1739451 (-) 912 WP_000895307.1 ABC transporter ATP-binding protein -
  SPPN_RS14055 (SPPN_09170) - 1739574..1739765 (+) 192 WP_000836789.1 hypothetical protein -
  SPPN_RS08970 (SPPN_09180) - 1739983..1740267 (+) 285 Protein_1815 IS30 family transposase -
  SPPN_RS08975 (SPPN_09185) - 1740670..1741286 (+) 617 Protein_1816 TVP38/TMEM64 family protein -
  SPPN_RS08980 (SPPN_09190) scrK 1741606..1742493 (-) 888 WP_000164308.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15899.80 Da        Isoelectric Point: 5.2152

>NTDB_id=42017 SPPN_RS08845 WP_000609572.1 1722216..1722638(-) (ssb) [Streptococcus pseudopneumoniae IS7493]
MINNVVLVGRLTKDAELRYTQSNVAVATFTLAVNRTFKSENGEREADFINCVMWRKQAENLANWAKKGALIGITGRIQTR
TYDNQQGQRVYVTEVVAENFQLMEFKKDGSQPVVDNHDQQAPNFARNSNPMDISDDDLPF

Nucleotide


Download         Length: 423 bp        

>NTDB_id=42017 SPPN_RS08845 WP_000609572.1 1722216..1722638(-) (ssb) [Streptococcus pseudopneumoniae IS7493]
ATGATAAATAATGTCGTATTAGTTGGTCGTTTGACCAAAGACGCAGAATTACGCTACACACAATCAAATGTGGCAGTCGC
TACGTTTACTCTTGCAGTAAATCGCACATTTAAAAGCGAGAATGGAGAGCGTGAAGCTGATTTTATCAATTGCGTTATGT
GGCGCAAGCAGGCTGAAAATCTTGCTAACTGGGCTAAGAAAGGCGCTTTGATTGGAATCACTGGACGCATTCAGACTCGG
ACTTATGATAACCAACAAGGACAACGTGTCTATGTGACAGAAGTGGTTGCTGAGAATTTCCAGCTGATGGAATTTAAGAA
AGATGGTAGTCAACCAGTAGTTGATAACCACGACCAGCAAGCACCTAATTTTGCGAGAAATTCAAATCCGATGGATATTT
CGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.488

100

0.657
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.657
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.714

0.443
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.857

100

0.429
  ssbB/cilA Streptococcus mitis NCTC 12261

41.429

100

0.414
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.429

100

0.414
  ssbB/cilA Streptococcus pneumoniae Rx1

40.714

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.714

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.714

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.714

100

0.407
  ssb Neisseria gonorrhoeae MS11

30.233

100

0.371
  ssb Neisseria meningitidis MC58

30.233

100

0.371
  ssb Vibrio cholerae strain A1552

30.058

100

0.371

Multiple sequence alignment