Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GEOTH_RS01460 Genome accession   NC_015660
Coordinates   281720..282064 (+) Length   114 a.a.
NCBI ID   WP_003247808.1    Uniprot ID   A0AB38R2G4
Organism   Parageobacillus thermoglucosidasius C56-YS93     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 276720..287064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOTH_RS01430 (Geoth_0270) - 277176..277631 (+) 456 WP_003247799.1 DUF1284 domain-containing protein -
  GEOTH_RS01435 (Geoth_0271) - 277618..277737 (+) 120 WP_233504762.1 histidine kinase -
  GEOTH_RS01440 (Geoth_0272) - 277770..279146 (+) 1377 WP_003247801.1 aspartate kinase -
  GEOTH_RS01445 (Geoth_0274) - 279361..280326 (+) 966 WP_013876153.1 processed acidic surface protein -
  GEOTH_RS01450 (Geoth_0275) - 280332..280940 (+) 609 WP_013876154.1 class D sortase -
  GEOTH_RS01455 (Geoth_0276) - 280959..281411 (-) 453 WP_013876155.1 YwpF-like family protein -
  GEOTH_RS01460 (Geoth_0277) ssbB 281720..282064 (+) 345 WP_003247808.1 single-stranded DNA-binding protein Machinery gene
  GEOTH_RS01465 (Geoth_0278) - 282215..282625 (-) 411 WP_041270013.1 helix-turn-helix domain-containing protein -
  GEOTH_RS01470 (Geoth_0279) - 282831..283331 (+) 501 WP_003247812.1 hypothetical protein -
  GEOTH_RS01485 (Geoth_0280) - 284037..285395 (+) 1359 WP_003247814.1 peptidoglycan-binding protein -
  GEOTH_RS01495 (Geoth_0281) wecB 285748..286893 (+) 1146 WP_003247816.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12789.63 Da        Isoelectric Point: 9.6276

>NTDB_id=41249 GEOTH_RS01460 WP_003247808.1 281720..282064(+) (ssbB) [Parageobacillus thermoglucosidasius C56-YS93]
MINQVVLVGRLTKDPELRYTADGAAVVNITLAVTRNFRNAEGGIDTDFVQCTLWRKVAENTANYCRKGSIIGVMGRIQTR
NYEKKDGQRVFVTEVVAESVRFMGGKTHAWIEHS

Nucleotide


Download         Length: 345 bp        

>NTDB_id=41249 GEOTH_RS01460 WP_003247808.1 281720..282064(+) (ssbB) [Parageobacillus thermoglucosidasius C56-YS93]
ATGATCAACCAAGTCGTGCTTGTCGGCCGGCTGACAAAAGATCCGGAACTTCGATATACCGCCGATGGAGCAGCGGTCGT
TAACATCACATTAGCGGTGACAAGAAATTTTCGTAACGCGGAAGGAGGAATTGACACTGATTTCGTCCAATGCACGCTCT
GGCGGAAAGTAGCAGAGAATACGGCGAATTATTGCCGGAAAGGTTCCATTATCGGCGTCATGGGACGGATTCAAACGCGA
AATTATGAAAAGAAAGACGGACAGCGAGTGTTTGTGACGGAAGTGGTAGCCGAATCCGTGCGATTTATGGGCGGCAAGAC
GCATGCATGGATCGAACATTCATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.981

92.982

0.623
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.551

93.86

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

57.009

93.86

0.535
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.593

94.737

0.404
  ssbA Streptococcus mutans UA159

41.667

94.737

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

39.815

94.737

0.377
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.815

94.737

0.377
  ssbB Lactococcus lactis subsp. cremoris KW2

38.053

99.123

0.377
  ssbB/cilA Streptococcus pneumoniae Rx1

38.889

94.737

0.368
  ssbB/cilA Streptococcus pneumoniae D39

38.889

94.737

0.368
  ssbB/cilA Streptococcus pneumoniae R6

38.889

94.737

0.368
  ssbB/cilA Streptococcus mitis SK321

38.889

94.737

0.368
  ssb Vibrio cholerae strain A1552

36.842

100

0.368

Multiple sequence alignment