Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SGPB_RS01640 Genome accession   NC_015600
Coordinates   303977..304462 (+) Length   161 a.a.
NCBI ID   WP_043910355.1    Uniprot ID   -
Organism   Streptococcus pasteurianus ATCC 43144     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 298977..309462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS01640 (SGPB_0281) comX/sigX 303977..304462 (+) 486 WP_043910355.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGPB_RS11685 - 305123..305281 (-) 159 Protein_282 IS5/IS1182 family transposase -
  SGPB_RS11160 (SGPB_0282) - 305341..305604 (-) 264 WP_117479781.1 hypothetical protein -
  SGPB_RS11165 (SGPB_0283) - 305852..305992 (-) 141 WP_013851467.1 hypothetical protein -
  SGPB_RS01655 (SGPB_0284) - 306325..307686 (-) 1362 WP_013851468.1 aspartate kinase -
  SGPB_RS01660 (SGPB_0285) - 307781..308431 (+) 651 WP_003063332.1 HAD family hydrolase -
  SGPB_RS01665 (SGPB_0286) - 308627..309415 (+) 789 WP_003063335.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19448.34 Da        Isoelectric Point: 7.2744

>NTDB_id=41061 SGPB_RS01640 WP_043910355.1 303977..304462(+) (comX/sigX) [Streptococcus pasteurianus ATCC 43144]
MEAFEAYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDVLQDELSLYSYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQTSFLDLADYVAYQERLQAVEQRLGIEAREKLAKVMRGERFEGKKAFLAQIEPFFNEFKNN
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=41061 SGPB_RS01640 WP_043910355.1 303977..304462(+) (comX/sigX) [Streptococcus pasteurianus ATCC 43144]
ATGGAAGCATTTGAAGCCTATTTTGAAAAAGTTAAACCGATTGTACTTAAGTTGCGTCGTCACTATTTTGTTAAACTGTG
GGACTACGATGATTGGTTACAAGAGGGACGGGTGGTTCTTTTCCGCCTTTTACAAGAAAAGCCAGACGTGTTGCAGGATG
AGTTGTCCCTTTATTCTTATTTTAAAACAAAGTTTTCCAACTATCTCAAGGATGTGATTCGTCATCAGGAAAGCCTGAAA
CGCAAGTTTAATCAGCTACCATATGAGGAAATTAGTGATGTGGGGCATTGTTTAGCACAAACAAGTTTTCTGGACCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAAGCGGTTGAGCAGCGACTGGGAATAGAGGCACGAGAGAAATTGGCGAAGG
TGATGCGTGGGGAACGCTTTGAGGGAAAAAAGGCTTTTCTAGCCCAGATTGAGCCCTTCTTTAACGAGTTTAAAAATAAT
TTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.