Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SGPB_RS01350 Genome accession   NC_015600
Coordinates   242350..242838 (+) Length   162 a.a.
NCBI ID   WP_043910349.1    Uniprot ID   -
Organism   Streptococcus pasteurianus ATCC 43144     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 237350..247838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS01350 (SGPB_0228) comX/sigX 242350..242838 (+) 489 WP_043910349.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGPB_RS01355 (SGPB_0229) - 242971..243237 (+) 267 WP_003063199.1 ACT domain-containing protein -
  SGPB_RS01360 (SGPB_0230) - 243249..244586 (+) 1338 WP_003063201.1 PFL family protein -
  SGPB_RS01365 (SGPB_0232) - 244804..245508 (+) 705 WP_041973320.1 histidine phosphatase family protein -
  SGPB_RS01370 (SGPB_0233) - 245492..246265 (+) 774 WP_003063208.1 M15 family metallopeptidase -
  SGPB_RS01375 (SGPB_0234) - 246262..246843 (+) 582 WP_003063210.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19559.44 Da        Isoelectric Point: 7.2748

>NTDB_id=41057 SGPB_RS01350 WP_043910349.1 242350..242838(+) (comX/sigX) [Streptococcus pasteurianus ATCC 43144]
MEAFEAYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDVLQDELSLYSYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQTSFLDLADYVAYQERLQAVEQRLGIEAREKLAKVMRGERFEGKKAFLAQIEPFFNEFREN
SK

Nucleotide


Download         Length: 489 bp        

>NTDB_id=41057 SGPB_RS01350 WP_043910349.1 242350..242838(+) (comX/sigX) [Streptococcus pasteurianus ATCC 43144]
ATGGAAGCATTTGAAGCCTATTTTGAAAAAGTTAAACCGATTGTACTTAAGTTGCGTCGTCACTATTTTGTTAAACTGTG
GGACTACGATGATTGGTTACAAGAGGGACGGGTGGTTCTTTTCCGCCTTTTACAAGAAAAGCCAGACGTGTTGCAGGATG
AGTTGTCCCTTTATTCTTATTTTAAAACAAAGTTTTCCAACTATCTCAAGGATGTGATTCGTCATCAGGAAAGCCTGAAA
CGCAAGTTTAATCAGCTACCATATGAGGAAATTAGTGATGTGGGGCATTGTTTAGCACAAACAAGTTTTCTGGACCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAAGCGGTTGAGCAGCGACTGGGAATAGAGGCACGAGAGAAATTGGCGAAGG
TGATGCGTGGGGAACGCTTTGAGGGAAAAAAGGCTTTTCTAGCCCAGATTGAGCCCTTCTTTAACGAGTTTAGGGAAAAT
AGCAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.