Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY41_RS18415 | Genome accession | NZ_CP046835 |
| Coordinates | 2251112..2251510 (+) | Length | 132 a.a. |
| NCBI ID | WP_130312477.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain 07-2444 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2246112..2256510
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY41_RS18400 | pdhR | 2248181..2248948 (-) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY41_RS18405 | ampD | 2249337..2249909 (-) | 573 | WP_158123812.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY41_RS18410 | nadC | 2250002..2250889 (+) | 888 | WP_158123813.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY41_RS18415 | pilA | 2251112..2251510 (+) | 399 | WP_130312477.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| GPY41_RS18420 | pilB | 2251515..2253203 (+) | 1689 | WP_158123814.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY41_RS18425 | pilC | 2253252..2254478 (+) | 1227 | WP_017789875.1 | type II secretion system F family protein | Machinery gene |
| GPY41_RS18430 | pilD | 2254572..2255441 (+) | 870 | WP_158123815.1 | A24 family peptidase | Machinery gene |
| GPY41_RS18435 | coaE | 2255443..2256051 (+) | 609 | WP_158123816.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 13592.89 Da Isoelectric Point: 9.9916
>NTDB_id=408632 GPY41_RS18415 WP_130312477.1 2251112..2251510(+) (pilA) [Vibrio vulnificus strain 07-2444]
MKKLNKTKKQQGFTLIELMIVVAIIGILSAVAVPAYKNYVAKSEAATALGSIRALVTPAEMMIQENGTISGGVSALGGSA
SHALGTITAAGSKIEFTFGSGSLVNKKIALTKDASTGWKCTYDAGVPLDKCN
MKKLNKTKKQQGFTLIELMIVVAIIGILSAVAVPAYKNYVAKSEAATALGSIRALVTPAEMMIQENGTISGGVSALGGSA
SHALGTITAAGSKIEFTFGSGSLVNKKIALTKDASTGWKCTYDAGVPLDKCN
Nucleotide
Download Length: 399 bp
>NTDB_id=408632 GPY41_RS18415 WP_130312477.1 2251112..2251510(+) (pilA) [Vibrio vulnificus strain 07-2444]
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCAATTATTGGTAT
TTTGTCTGCCGTAGCTGTACCAGCATATAAAAATTATGTTGCTAAAAGCGAAGCAGCTACTGCGCTAGGGAGTATTCGAG
CTTTAGTAACCCCAGCTGAAATGATGATTCAAGAAAATGGGACGATTAGCGGAGGCGTCTCGGCTCTTGGCGGCTCAGCA
TCACACGCACTAGGAACAATAACTGCTGCCGGATCTAAAATTGAGTTTACCTTTGGGAGCGGTTCTTTAGTGAACAAGAA
AATTGCACTCACCAAAGATGCTTCCACTGGCTGGAAATGCACATATGATGCTGGCGTACCATTAGATAAATGTAATTAA
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCAATTATTGGTAT
TTTGTCTGCCGTAGCTGTACCAGCATATAAAAATTATGTTGCTAAAAGCGAAGCAGCTACTGCGCTAGGGAGTATTCGAG
CTTTAGTAACCCCAGCTGAAATGATGATTCAAGAAAATGGGACGATTAGCGGAGGCGTCTCGGCTCTTGGCGGCTCAGCA
TCACACGCACTAGGAACAATAACTGCTGCCGGATCTAAAATTGAGTTTACCTTTGGGAGCGGTTCTTTAGTGAACAAGAA
AATTGCACTCACCAAAGATGCTTCCACTGGCTGGAAATGCACATATGATGCTGGCGTACCATTAGATAAATGTAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.551 |
100 |
0.508 |
| pilA | Pseudomonas aeruginosa PAK |
43.796 |
100 |
0.455 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.304 |
100 |
0.432 |
| pilA | Vibrio cholerae strain A1552 |
40.602 |
100 |
0.409 |
| pilA | Vibrio cholerae C6706 |
40.602 |
100 |
0.409 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.602 |
100 |
0.409 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.463 |
93.182 |
0.386 |
| pilA | Acinetobacter baumannii strain A118 |
38.462 |
98.485 |
0.379 |