Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY41_RS18425 Genome accession   NZ_CP046835
Coordinates   2253252..2254478 (+) Length   408 a.a.
NCBI ID   WP_017789875.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2248252..2259478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS18405 ampD 2249337..2249909 (-) 573 WP_158123812.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPY41_RS18410 nadC 2250002..2250889 (+) 888 WP_158123813.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY41_RS18415 pilA 2251112..2251510 (+) 399 WP_130312477.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GPY41_RS18420 pilB 2251515..2253203 (+) 1689 WP_158123814.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY41_RS18425 pilC 2253252..2254478 (+) 1227 WP_017789875.1 type II secretion system F family protein Machinery gene
  GPY41_RS18430 pilD 2254572..2255441 (+) 870 WP_158123815.1 A24 family peptidase Machinery gene
  GPY41_RS18435 coaE 2255443..2256051 (+) 609 WP_158123816.1 dephospho-CoA kinase -
  GPY41_RS18440 zapD 2256084..2256824 (+) 741 WP_053541912.1 cell division protein ZapD -
  GPY41_RS18445 yacG 2256887..2257081 (+) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  GPY41_RS18450 rplS 2257314..2257667 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  GPY41_RS18455 trmD 2257709..2258458 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GPY41_RS18460 rimM 2258486..2259034 (-) 549 WP_038941427.1 ribosome maturation factor RimM -
  GPY41_RS18465 rpsP 2259050..2259298 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45263.56 Da        Isoelectric Point: 10.3681

>NTDB_id=408634 GPY41_RS18425 WP_017789875.1 2253252..2254478(+) (pilC) [Vibrio vulnificus strain 07-2444]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSRKSPAFRLKLSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=408634 GPY41_RS18425 WP_017789875.1 2253252..2254478(+) (pilC) [Vibrio vulnificus strain 07-2444]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCTGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCAGGTACGCCGTTATCGAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAGGCGCTGATTTACCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTTGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGTGCCATTTATTTA
CTGCGCGGTCTAAGTCGCAAGTCTCCCGCATTTCGGCTTAAACTCTCGCGACTAAGCTTGAAAATTCCAGTGATTGGTGG
GGTCTTATCCAAAGCTGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGTTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCTGCC
GGGATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria gonorrhoeae MS11

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment