Detailed information NTG0408635

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY41_RS18430
• Genome accession: NZ_CP046835
• Coordinates: 2254572..2255441 (+)
• Length: 289 a.a.
• NCBI ID: WP_158123815.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 07-2444
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2249572..2260441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY41_RS18410	nadC	2250002..2250889 (+)	888	WP_158123813.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY41_RS18415	pilA	2251112..2251510 (+)	399	WP_130312477.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
GPY41_RS18420	pilB	2251515..2253203 (+)	1689	WP_158123814.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY41_RS18425	pilC	2253252..2254478 (+)	1227	WP_017789875.1	type II secretion system F family protein	Machinery gene
GPY41_RS18430	pilD	2254572..2255441 (+)	870	WP_158123815.1	A24 family peptidase	Machinery gene
GPY41_RS18435	coaE	2255443..2256051 (+)	609	WP_158123816.1	dephospho-CoA kinase	-
GPY41_RS18440	zapD	2256084..2256824 (+)	741	WP_053541912.1	cell division protein ZapD	-
GPY41_RS18445	yacG	2256887..2257081 (+)	195	WP_026060801.1	DNA gyrase inhibitor YacG	-
GPY41_RS18450	rplS	2257314..2257667 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
GPY41_RS18455	trmD	2257709..2258458 (-)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY41_RS18460	rimM	2258486..2259034 (-)	549	WP_038941427.1	ribosome maturation factor RimM	-
GPY41_RS18465	rpsP	2259050..2259298 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32249.29 Da
• Isoelectric Point: 6.4630

>NTDB_id=408635 GPY41_RS18430 WP_158123815.1 2254572..2255441(+) (pilD) [Vibrio vulnificus strain 07-2444]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMEMEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=408635 GPY41_RS18430 WP_158123815.1 2254572..2255441(+) (pilD) [Vibrio vulnificus strain 07-2444]
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCGAAAATAATGGAAATGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGCCCTTCGTGCCATACACCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATTAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACGCTGCCG
CTGACGTGGGCAGGCATCGCGCTAGCGTTACTAGAGATAAGTCCAGTATCTCTGCAAGATTCAGTGATCGGCGCGATGGC
TGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACGGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATACCTACCGATGATCATCTTACTTTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTAATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.083	99.654	0.768
pilD	Vibrio cholerae strain A1552	71.875	99.654	0.716
pilD	Acinetobacter nosocomialis M2	54.348	95.502	0.519
pilD	Acinetobacter baumannii D1279779	54.348	95.502	0.519
pilD	Neisseria gonorrhoeae MS11	48	95.156	0.457