Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPX93_RS10845 | Genome accession | NZ_CP046749 |
| Coordinates | 2396255..2396665 (+) | Length | 136 a.a. |
| NCBI ID | WP_123162948.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 2015V-1118 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2391255..2401665
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX93_RS10820 | dsbC | 2391824..2392576 (-) | 753 | WP_123162945.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
| GPX93_RS10825 | xerD | 2392593..2393501 (-) | 909 | WP_123162946.1 | site-specific tyrosine recombinase XerD | - |
| GPX93_RS10830 | fldB | 2393639..2394157 (+) | 519 | WP_000690112.1 | flavodoxin FldB | - |
| GPX93_RS10835 | ampD | 2394273..2394818 (-) | 546 | WP_053033235.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPX93_RS10840 | nadC | 2395120..2396010 (+) | 891 | WP_123162947.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPX93_RS10845 | pilA | 2396255..2396665 (+) | 411 | WP_123162948.1 | pilin | Machinery gene |
| GPX93_RS10850 | pilB | 2396672..2398360 (+) | 1689 | WP_123162949.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPX93_RS10855 | pilC | 2398403..2399629 (+) | 1227 | WP_000648506.1 | type II secretion system F family protein | Machinery gene |
| GPX93_RS10860 | pilD | 2399687..2400562 (+) | 876 | WP_000418747.1 | A24 family peptidase | Machinery gene |
| GPX93_RS10865 | coaE | 2400559..2401167 (+) | 609 | WP_184482901.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14199.48 Da Isoelectric Point: 8.4829
>NTDB_id=407107 GPX93_RS10845 WP_123162948.1 2396255..2396665(+) (pilA) [Vibrio cholerae strain 2015V-1118]
MKAYKNKQQQGFTLIELMIVVAIIGVLAAIAVPAYKDYVKKSQASSALATLKSLVTPAELLIQSDGLISGGVAVLGISAS
SNTLGTISVGSNNTSLEFLFDAGDMANTKLTMSRSTSGWVCVRSDTTKIPPIEGCQ
MKAYKNKQQQGFTLIELMIVVAIIGVLAAIAVPAYKDYVKKSQASSALATLKSLVTPAELLIQSDGLISGGVAVLGISAS
SNTLGTISVGSNNTSLEFLFDAGDMANTKLTMSRSTSGWVCVRSDTTKIPPIEGCQ
Nucleotide
Download Length: 411 bp
>NTDB_id=407107 GPX93_RS10845 WP_123162948.1 2396255..2396665(+) (pilA) [Vibrio cholerae strain 2015V-1118]
ATGAAAGCGTATAAAAACAAACAACAGCAAGGTTTTACCTTAATTGAATTAATGATTGTGGTGGCGATTATTGGTGTGTT
GGCAGCGATTGCAGTACCTGCTTACAAAGATTACGTCAAAAAAAGCCAAGCTTCATCAGCGTTAGCTACCTTGAAAAGCC
TCGTAACACCGGCAGAACTACTCATTCAATCGGATGGTCTTATCAGCGGTGGTGTAGCAGTGCTAGGTATATCTGCTAGT
TCAAATACGCTTGGAACTATAAGTGTTGGGAGCAACAATACTTCCCTCGAATTTTTATTCGATGCTGGTGATATGGCGAA
CACAAAGCTAACAATGAGCCGAAGTACTAGCGGATGGGTTTGTGTGAGAAGTGATACAACAAAAATTCCACCTATTGAAG
GTTGCCAATAA
ATGAAAGCGTATAAAAACAAACAACAGCAAGGTTTTACCTTAATTGAATTAATGATTGTGGTGGCGATTATTGGTGTGTT
GGCAGCGATTGCAGTACCTGCTTACAAAGATTACGTCAAAAAAAGCCAAGCTTCATCAGCGTTAGCTACCTTGAAAAGCC
TCGTAACACCGGCAGAACTACTCATTCAATCGGATGGTCTTATCAGCGGTGGTGTAGCAGTGCTAGGTATATCTGCTAGT
TCAAATACGCTTGGAACTATAAGTGTTGGGAGCAACAATACTTCCCTCGAATTTTTATTCGATGCTGGTGATATGGCGAA
CACAAAGCTAACAATGAGCCGAAGTACTAGCGGATGGGTTTGTGTGAGAAGTGATACAACAAAAATTCCACCTATTGAAG
GTTGCCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
47.143 |
100 |
0.485 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.953 |
100 |
0.471 |
| pilA | Vibrio cholerae strain A1552 |
42.953 |
100 |
0.471 |
| pilA | Vibrio cholerae C6706 |
42.953 |
100 |
0.471 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.437 |
100 |
0.412 |
| pilA | Pseudomonas aeruginosa PAK |
36.486 |
100 |
0.397 |
| pilA/pilA1 | Eikenella corrodens VA1 |
34.211 |
100 |
0.382 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
36.957 |
100 |
0.375 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
36.691 |
100 |
0.375 |
| pilA | Acinetobacter baumannii strain A118 |
37.5 |
100 |
0.375 |