Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   GPA00_RS04795 Genome accession   NZ_CP046629
Coordinates   948792..949268 (+) Length   158 a.a.
NCBI ID   WP_157327692.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 943792..954268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS04795 (GPA00_04795) comX/sigX 948792..949268 (+) 477 WP_157327692.1 sigma-70 family RNA polymerase sigma factor Regulator
  GPA00_RS04800 (GPA00_04800) - 949304..950662 (-) 1359 WP_074629170.1 aspartate kinase -
  GPA00_RS04805 (GPA00_04805) - 950763..951419 (+) 657 WP_074639770.1 HAD family hydrolase -
  GPA00_RS04810 (GPA00_04810) - 951602..952390 (+) 789 WP_074639769.1 enoyl-CoA hydratase -
  GPA00_RS04815 (GPA00_04815) - 952506..952940 (+) 435 WP_029876000.1 MarR family winged helix-turn-helix transcriptional regulator -
  GPA00_RS04820 (GPA00_04820) - 952943..953917 (+) 975 WP_157327694.1 beta-ketoacyl-ACP synthase III -
  GPA00_RS04825 (GPA00_04825) - 953976..954200 (+) 225 WP_003067534.1 acyl carrier protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19301.14 Da        Isoelectric Point: 7.9014

>NTDB_id=406304 GPA00_RS04795 WP_157327692.1 948792..949268(+) (comX/sigX) [Streptococcus equinus strain CNU G6]
MDFESYFETVKPIILKLRCYYFVKLWDYDDWIQEGRIVFFKLLQEHPEVLINEGRRYTYFKTKFSNHVKDTIRHQESFKR
KFNRMPYEEIGEISHCVPQLNFFEVADFIAYRDSLSQLKATLSLEEQEKLAKVVRGERFEGKKAFLRQIEPYFSDFKH

Nucleotide


Download         Length: 477 bp        

>NTDB_id=406304 GPA00_RS04795 WP_157327692.1 948792..949268(+) (comX/sigX) [Streptococcus equinus strain CNU G6]
GTGGATTTTGAAAGCTATTTTGAAACTGTAAAACCAATTATTTTAAAATTAAGATGTTATTACTTTGTGAAATTATGGGA
TTATGACGACTGGATTCAGGAAGGGCGTATTGTCTTTTTCAAACTACTGCAAGAACATCCTGAGGTTCTGATTAATGAGG
GAAGACGCTATACTTACTTCAAGACAAAATTTTCTAATCATGTAAAGGATACCATCCGCCATCAGGAATCCTTTAAACGT
AAATTTAATCGTATGCCTTATGAAGAAATAGGTGAAATTAGTCATTGTGTCCCTCAGCTTAATTTTTTTGAAGTGGCAGA
CTTTATTGCTTACCGAGATAGTTTGTCTCAATTAAAAGCAACTTTAAGCTTAGAAGAGCAAGAAAAGCTAGCAAAAGTAG
TCAGAGGGGAACGATTTGAAGGGAAGAAAGCCTTCTTACGCCAAATTGAACCTTACTTTTCTGACTTTAAGCACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.