Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SGGBAA2069_RS01910 Genome accession   NC_015215
Coordinates   350080..350565 (+) Length   161 a.a.
NCBI ID   WP_043913843.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 345080..355565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS01910 (SGGBAA2069_c03170) comX/sigX 350080..350565 (+) 486 WP_043913843.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGGBAA2069_RS01915 (SGGBAA2069_c03180) - 350677..352299 (-) 1623 WP_009853408.1 glycoside hydrolase family 5 protein -
  SGGBAA2069_RS01920 (SGGBAA2069_c03190) - 352748..354109 (-) 1362 WP_009853409.1 aspartate kinase -
  SGGBAA2069_RS01925 (SGGBAA2069_c03200) - 354203..354850 (+) 648 WP_009853410.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19336.21 Da        Isoelectric Point: 7.9985

>NTDB_id=40034 SGGBAA2069_RS01910 WP_043913843.1 350080..350565(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
METFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFKNN
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=40034 SGGBAA2069_RS01910 WP_043913843.1 350080..350565(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATTATG
GGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGGACG
ACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTGAAA
CGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTGGGAGCGGGAGCAAAAGAAAAACTAGCGAAGG
TGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAAAAATAAT
TTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.