Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   FM022_RS11435 Genome accession   NZ_CP041386
Coordinates   2133304..2133519 (-) Length   71 a.a.
NCBI ID   WP_252981544.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain ED-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128304..2138519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FM022_RS10550 (FM022_10550) frr 2128636..2129191 (+) 556 Protein_2110 ribosome recycling factor -
  FM022_RS10555 (FM022_10555) pyrE 2129194..2129800 (+) 607 Protein_2111 orotate phosphoribosyltransferase -
  FM022_RS10560 (FM022_10560) - 2129808..2130278 (+) 471 WP_143263512.1 RDD family protein -
  FM022_RS11415 - 2130340..2130840 (+) 501 WP_252981666.1 MFS transporter -
  FM022_RS11420 - 2130837..2131337 (+) 501 WP_252981541.1 MFS transporter -
  FM022_RS11630 (FM022_10570) - 2131354..2132321 (-) 968 Protein_2115 zinc transporter ZntB -
  FM022_RS10575 (FM022_10575) - 2132328..2133065 (-) 738 WP_143263513.1 YaaA family protein -
  FM022_RS11435 Cj0011c 2133304..2133519 (-) 216 WP_252981544.1 helix-hairpin-helix domain-containing protein Machinery gene
  FM022_RS11440 - 2133586..2133807 (-) 222 WP_252981545.1 DUF4198 domain-containing protein -
  FM022_RS10585 (FM022_10585) - 2133741..2134256 (-) 516 WP_252981546.1 DUF4198 domain-containing protein -
  FM022_RS11445 - 2134727..2135305 (+) 579 WP_252981547.1 metallophosphoesterase -
  FM022_RS11450 - 2135506..2135652 (+) 147 WP_252981548.1 hypothetical protein -
  FM022_RS10595 (FM022_10595) - 2135692..2136104 (-) 413 Protein_2122 Hsp20/alpha crystallin family protein -
  FM022_RS10600 (FM022_10600) - 2136286..2136705 (-) 420 WP_252981549.1 hemerythrin family protein -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 7840.25 Da        Isoelectric Point: 10.0224

>NTDB_id=371786 FM022_RS11435 WP_252981544.1 2133304..2133519(-) (Cj0011c) [Aliarcobacter butzleri strain ED-1]
MKKIFGLIALCGTFLFGAINLQTASKEELMSIKGIGEKKAEQIMEYRKTNTIKSADDLKNIKGFGDNIVSK

Nucleotide


Download         Length: 216 bp        

>NTDB_id=371786 FM022_RS11435 WP_252981544.1 2133304..2133519(-) (Cj0011c) [Aliarcobacter butzleri strain ED-1]
ATGAAAAAGATCTTTGGATTGATTGCTTTATGCGGAACATTTCTTTTTGGTGCCATTAATTTACAAACAGCTTCAAAAGA
AGAACTTATGAGTATTAAAGGAATAGGTGAAAAAAAAGCTGAGCAAATTATGGAATATAGAAAAACAAATACTATAAAAA
GCGCAGATGATTTGAAAAACATCAAAGGTTTTGGTGATAATATTGTTTCAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(19-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.704

100

0.507
  comE Neisseria gonorrhoeae MS11

42.667

100

0.451
  comE Neisseria gonorrhoeae MS11

42.667

100

0.451
  comE Neisseria gonorrhoeae MS11

42.667

100

0.451
  comE Neisseria gonorrhoeae MS11

42.667

100

0.451
  comEA Streptococcus thermophilus LMD-9

48.214

78.873

0.38
  comEA Acinetobacter baumannii D1279779

48.214

78.873

0.38
  comEA Acinetobacter baumannii strain A118

46.429

78.873

0.366
  comEA Vibrio cholerae strain A1552

49.057

74.648

0.366
  comEA Vibrio cholerae C6706

49.057

74.648

0.366
  comEA Vibrio parahaemolyticus RIMD 2210633

47.273

77.465

0.366
  comEA Legionella pneumophila str. Paris

45.614

80.282

0.366
  comEA Legionella pneumophila strain ERS1305867

45.614

80.282

0.366
  comEA Staphylococcus aureus N315

48.148

76.056

0.366
  comEA Staphylococcus aureus MW2

48.148

76.056

0.366

Multiple sequence alignment