Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   GALLO_RS01920 Genome accession   NC_013798
Coordinates   359587..360072 (+) Length   161 a.a.
NCBI ID   WP_044555594.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 354587..365072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS01920 (GALLO_0329) comX/sigX 359587..360072 (+) 486 WP_044555594.1 sigma-70 family RNA polymerase sigma factor Regulator
  GALLO_RS01925 (GALLO_0330) - 360184..361806 (-) 1623 WP_009853408.1 glycoside hydrolase family 5 protein -
  GALLO_RS01930 (GALLO_0331) - 362255..363616 (-) 1362 WP_009853409.1 aspartate kinase -
  GALLO_RS01935 (GALLO_0332) - 363710..364357 (+) 648 WP_009853410.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19392.32 Da        Isoelectric Point: 8.6960

>NTDB_id=36179 GALLO_RS01920 WP_044555594.1 359587..360072(+) (comX/sigX) [Streptococcus gallolyticus UCN34]
METFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLRAVEQRLGVGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFKNN
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=36179 GALLO_RS01920 WP_044555594.1 359587..360072(+) (comX/sigX) [Streptococcus gallolyticus UCN34]
ATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATTATG
GGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGGACG
ACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTGAAA
CGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCGGGCGGTTGAGCAGCGATTGGGAGTAGGAGCAAAAGAAAAACTAGCGAAGG
TGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAAAAATAAT
TTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.