Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   E8M05_RS01890 Genome accession   NZ_CP039457
Coordinates   328851..329336 (+) Length   161 a.a.
NCBI ID   WP_043910355.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP067     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 323851..334336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS01890 (E8M05_01885) comX/sigX 328851..329336 (+) 486 WP_043910355.1 sigma-70 family RNA polymerase sigma factor Regulator
  E8M05_RS01895 (E8M05_01890) - 330214..330639 (-) 426 WP_233437508.1 hypothetical protein -
  E8M05_RS11205 - 330720..330860 (-) 141 WP_013851467.1 hypothetical protein -
  E8M05_RS01900 (E8M05_01895) - 331190..332546 (-) 1357 Protein_311 aspartate kinase -
  E8M05_RS01905 (E8M05_01900) - 332641..333291 (+) 651 WP_003063332.1 HAD family phosphatase -
  E8M05_RS01910 (E8M05_01905) - 333487..334275 (+) 789 WP_003063335.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19448.34 Da        Isoelectric Point: 7.2744

>NTDB_id=358776 E8M05_RS01890 WP_043910355.1 328851..329336(+) (comX/sigX) [Streptococcus pasteurianus strain WUSP067]
MEAFEAYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDVLQDELSLYSYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQTSFLDLADYVAYQERLQAVEQRLGIEAREKLAKVMRGERFEGKKAFLAQIEPFFNEFKNN
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=358776 E8M05_RS01890 WP_043910355.1 328851..329336(+) (comX/sigX) [Streptococcus pasteurianus strain WUSP067]
ATGGAAGCATTTGAAGCCTATTTTGAAAAAGTTAAACCGATTGTACTTAAGTTGCGTCGTCACTATTTTGTTAAACTGTG
GGACTACGATGATTGGTTACAAGAGGGACGGGTGGTTCTTTTCCGCCTTTTACAAGAAAAGCCAGACGTGTTGCAGGATG
AGTTGTCCCTTTATTCTTATTTTAAAACAAAGTTTTCCAACTATCTCAAGGATGTGATTCGTCATCAGGAAAGCCTGAAA
CGCAAGTTTAATCAGCTACCATATGAGGAAATTAGTGATGTGGGGCATTGTTTAGCACAAACAAGTTTTCTGGACCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAAGCGGTTGAGCAGCGACTGGGAATAGAGGCACGAGAGAAATTGGCGAAGG
TGATGCGTGGGGAACGCTTTGAGGGAAAAAAGGCTTTTCTAGCCCAGATTGAGCCCTTCTTTAACGAGTTTAAAAATAAT
TTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.