Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | E5678_RS18025 | Genome accession | NZ_CP039252 |
| Coordinates | 3939295..3939723 (+) | Length | 142 a.a. |
| NCBI ID | WP_281728079.1 | Uniprot ID | - |
| Organism | Hydrogenophaga sp. PAMC20947 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3934295..3944723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5678_RS18010 (E5678_18000) | - | 3934884..3937151 (+) | 2268 | WP_247596819.1 | adenylate/guanylate cyclase domain-containing protein | - |
| E5678_RS18015 (E5678_18005) | - | 3937219..3938022 (+) | 804 | WP_136179809.1 | 3',5'-cyclic-nucleotide phosphodiesterase | - |
| E5678_RS18020 (E5678_18010) | pilA2 | 3938260..3938679 (+) | 420 | WP_136179810.1 | pilin | Machinery gene |
| E5678_RS18025 (E5678_18015) | pilA2 | 3939295..3939723 (+) | 429 | WP_281728079.1 | pilin | Machinery gene |
| E5678_RS18030 (E5678_18020) | pilA2 | 3940339..3940767 (+) | 429 | WP_281728080.1 | pilin | Machinery gene |
| E5678_RS18035 (E5678_18025) | pilA2 | 3941412..3941840 (+) | 429 | WP_281728081.1 | pilin | Machinery gene |
| E5678_RS18040 (E5678_18030) | - | 3942175..3942678 (+) | 504 | WP_136179811.1 | hypothetical protein | - |
| E5678_RS18045 (E5678_18035) | moaC | 3942830..3943267 (-) | 438 | WP_247597050.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14462.85 Da Isoelectric Point: 10.0548
>NTDB_id=357643 E5678_RS18025 WP_281728079.1 3939295..3939723(+) (pilA2) [Hydrogenophaga sp. PAMC20947]
MNRSMQKMQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRARVSESLVAASAAKIAVAENAANGQALASGWVAPSATPN
MTSAAIAADGVITVTTTARAGGGTVTFVPNPVLVAGTIPTDRIGWTCTGGTLVAKYRPAACR
MNRSMQKMQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRARVSESLVAASAAKIAVAENAANGQALASGWVAPSATPN
MTSAAIAADGVITVTTTARAGGGTVTFVPNPVLVAGTIPTDRIGWTCTGGTLVAKYRPAACR
Nucleotide
Download Length: 429 bp
>NTDB_id=357643 E5678_RS18025 WP_281728079.1 3939295..3939723(+) (pilA2) [Hydrogenophaga sp. PAMC20947]
ATGAATCGTTCTATGCAAAAAATGCAAAAAGGTTTTACCCTCATCGAATTGATGATTGTGGTGGCCATCATCGGTATTCT
GGCTGCTGTGGCACTGCCCGCTTACCAGGACTACACCGTGCGTGCTCGCGTGTCTGAATCGTTGGTTGCCGCTTCCGCTG
CCAAAATTGCAGTAGCTGAAAACGCCGCCAACGGGCAAGCCCTTGCATCGGGTTGGGTTGCACCTTCAGCCACTCCTAAT
ATGACATCTGCGGCGATTGCCGCTGATGGTGTGATCACCGTGACAACCACGGCTCGCGCAGGTGGTGGAACGGTTACCTT
TGTACCAAATCCAGTGCTGGTTGCTGGCACCATCCCAACCGATCGCATCGGTTGGACCTGTACCGGTGGCACATTGGTCG
CGAAGTACCGCCCTGCTGCGTGCCGTTAA
ATGAATCGTTCTATGCAAAAAATGCAAAAAGGTTTTACCCTCATCGAATTGATGATTGTGGTGGCCATCATCGGTATTCT
GGCTGCTGTGGCACTGCCCGCTTACCAGGACTACACCGTGCGTGCTCGCGTGTCTGAATCGTTGGTTGCCGCTTCCGCTG
CCAAAATTGCAGTAGCTGAAAACGCCGCCAACGGGCAAGCCCTTGCATCGGGTTGGGTTGCACCTTCAGCCACTCCTAAT
ATGACATCTGCGGCGATTGCCGCTGATGGTGTGATCACCGTGACAACCACGGCTCGCGCAGGTGGTGGAACGGTTACCTT
TGTACCAAATCCAGTGCTGGTTGCTGGCACCATCCCAACCGATCGCATCGGTTGGACCTGTACCGGTGGCACATTGGTCG
CGAAGTACCGCCCTGCTGCGTGCCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
63.309 |
97.887 |
0.62 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
62.59 |
97.887 |
0.613 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
49.091 |
100 |
0.57 |
| comP | Acinetobacter baylyi ADP1 |
45.695 |
100 |
0.486 |
| pilE | Neisseria gonorrhoeae MS11 |
36.842 |
100 |
0.444 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.821 |
100 |
0.415 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.259 |
100 |
0.415 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.141 |
100 |
0.401 |
| pilA | Acinetobacter baumannii strain A118 |
37.589 |
99.296 |
0.373 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.686 |
96.479 |
0.373 |