Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GII78_RS04450 Genome accession   NZ_CP045824
Coordinates   880508..882322 (+) Length   604 a.a.
NCBI ID   WP_032726627.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 875508..887322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS04440 (GII78_04440) - 876045..878378 (+) 2334 WP_038427533.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  GII78_RS04445 (GII78_04445) yfiB 878793..880514 (+) 1722 WP_069703770.1 ABC transporter ATP-binding protein -
  GII78_RS04450 (GII78_04450) rcrQ 880508..882322 (+) 1815 WP_032726627.1 ABC transporter ATP-binding protein Regulator
  GII78_RS04455 (GII78_04455) catD 882476..882880 (+) 405 WP_003244204.1 DoxX family oxidoreductase CatD -
  GII78_RS04460 (GII78_04460) catE 882898..883755 (+) 858 WP_064671921.1 catechol 2,3-dioxygenase -
  GII78_RS04465 (GII78_04465) lnrJ 883873..885075 (+) 1203 WP_015715521.1 two-component system sensor histidine kinase LnrJ -
  GII78_RS04470 (GII78_04470) lnrK 885072..885734 (+) 663 WP_015715522.1 two-component system response regulator LnrK -
  GII78_RS04475 (GII78_04475) lnrL 885878..886813 (+) 936 WP_003233591.1 linearmycin resistance ATP-binding protein LnrL -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67409.24 Da        Isoelectric Point: 9.7027

>NTDB_id=347675 GII78_RS04450 WP_032726627.1 880508..882322(+) (rcrQ) [Bacillus subtilis strain MB8_B10]
MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAERKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVG
KTVSGLIPVLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
LNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIK
AYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGP
TGAGKTTVTNLIARFYEPNDGKILIDGIDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTAN
AHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHR
LNTIQRADQIVVLKDGEMIEKGSHDELIRQKGFYSDLYESQFEK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=347675 GII78_RS04450 WP_032726627.1 880508..882322(+) (rcrQ) [Bacillus subtilis strain MB8_B10]
ATGCTAAAAGACATCCGCAAGCCTTTCCAATATCCCAAACTGCCAATTGACAAAAAAGAAGGCGCGAAAAAGCGGGCGAA
AGCAAAGGATACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGCTGAACGAAAAGGACTGCTCATACTTGTCATGC
TGATGGTTGTCATCAGCGCCATATTCGGGCTCCTTGGCCCCTTTGTGATCGGAAAGGCCATCGACCATTTTATCGTCGGG
AAAACGGTCAGCGGCTTGATTCCTGTTTTGCTTCTTCTGCTCGCTATCTATATCATTCAGTCCCTGTCGCTTTGGTTTCA
AAACTATTGGATGATTACGATCTCGCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATGAGCTGC
CGATTCCATTTTTTGATAAACAGCGGCACGGCGAGCTGATGAGCCGGGTGACGAATGACATCGAAAATGTCAGTTCTACC
TTAAATACGTCAGTCATTCAAATTTTGTCAAGCGTGATCACCTTTGTCGGGACCATTGCAGTGATGCTGTACATGAGCCC
GCTCCTTACATTGATTACGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGATCACCAACCGAACGGGAAAGC
TGTTTAAAGAACAGCAGAAAAACCTTGGTGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCATCAAA
GCATATTCACGTGAGAAGCAGATTACTGCTGAATTTCTCGAAAAAAACGCTGCACTCAAGACGTCGGGCTTTTGGGCGCA
GACGATTTCCGGGTTTATCCCGAAGGTCATGAACTCTTTGAATAACTTAAGCTTTACAATGATAGCGGCAATCGGCGGTT
TGTTTGCGCTGAAAGGCTGGATCTCGATCGGCTCCATCGTCGTCTTTGCCGAGTATTCAAGACAATTTACACGCCCTTTA
AACGATCTGGCCAACCAGTTTAATACGATGCTGTCCGCAATCGCCGGCGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAAGAGCGCGAGGATGAAAAGAACGCCGTGCATCAGCCCATCCAAACAGGCAGCATTGAATTCCGCGATGTGTCCTTCG
GTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTTTACCGTGCCTGCAGGGCAGTCCATCGCGTTTGTCGGACCG
ACGGGGGCGGGGAAGACAACCGTCACTAACCTTATCGCCCGTTTTTACGAGCCTAACGATGGAAAAATTTTAATCGACGG
TATAGATATTAAAACCCTTACTAGAGCAAGCCTGAGAAAAAACATGGGGTTTGTTCTTCAGGATTCTTTCTTATTTCAGG
GAACGATCAGAGAAAACATTCGCTACGGCAGGCTAGATGCTTCTGATCAGGAAGTCGAAGCCGCTGCAAAAACAGCGAAT
GCCCATAGTTTTATTGAAAGGCTGCCAAAAGGGTATGATACCGTGCTGACGCAAAACGGTTCGGGCATCAGTCAAGGACA
GAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCCGATCCGGTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACCGTTACAGAAGTCAACATTCAAGAAGCGCTCGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCACAGG
CTGAACACCATTCAAAGAGCGGACCAGATTGTGGTGCTAAAAGACGGTGAAATGATTGAAAAAGGCAGCCATGACGAGCT
GATTCGGCAAAAAGGATTTTACAGTGACTTATATGAAAGCCAATTTGAGAAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(382-531)

ABC transporter transmembrane region (ABC_membrane)

(49-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.31

96.026

0.377

Multiple sequence alignment