Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FIP52_RS01810 | Genome accession | NZ_CP041029 |
| Coordinates | 382246..382572 (-) | Length | 108 a.a. |
| NCBI ID | WP_140222245.1 | Uniprot ID | - |
| Organism | Riemerella anatipestifer strain WJ4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 377246..387572
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIP52_RS01800 (FIP52_01800) | - | 379800..380114 (+) | 315 | WP_064970703.1 | DUF4286 family protein | - |
| FIP52_RS01805 (FIP52_01805) | gyrB | 380240..382174 (+) | 1935 | WP_140222243.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| FIP52_RS01810 (FIP52_01810) | ssb | 382246..382572 (-) | 327 | WP_140222245.1 | single-stranded DNA-binding protein | Machinery gene |
| FIP52_RS01820 (FIP52_01820) | - | 383599..383946 (+) | 348 | WP_004918849.1 | hypothetical protein | - |
| FIP52_RS01825 (FIP52_01825) | - | 383950..385026 (-) | 1077 | WP_014938621.1 | tyrosine-type recombinase/integrase | - |
| FIP52_RS01830 (FIP52_01830) | - | 385067..385414 (-) | 348 | WP_014938620.1 | hypothetical protein | - |
| FIP52_RS01835 (FIP52_01835) | - | 385488..385691 (-) | 204 | WP_014938619.1 | putative signal transducing protein | - |
| FIP52_RS01840 (FIP52_01840) | - | 385767..386948 (+) | 1182 | WP_014938618.1 | acyl-CoA dehydrogenase family protein | - |
| FIP52_RS01845 (FIP52_01845) | - | 386977..387252 (+) | 276 | WP_014938617.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 12156.88 Da Isoelectric Point: 9.2704
>NTDB_id=324428 FIP52_RS01810 WP_140222245.1 382246..382572(-) (ssb) [Riemerella anatipestifer strain WJ4]
MKNKVQLIGNVGNTPEIKEVNNTKVAHLSIATNEVYKNAQGERVEQTEWHKVVAWGGLAEIIEKYVTKGKEIAVEGKLTY
RSYDDKEGNKRYVTEIVANDILLLGRAK
MKNKVQLIGNVGNTPEIKEVNNTKVAHLSIATNEVYKNAQGERVEQTEWHKVVAWGGLAEIIEKYVTKGKEIAVEGKLTY
RSYDDKEGNKRYVTEIVANDILLLGRAK
Nucleotide
Download Length: 327 bp
>NTDB_id=324428 FIP52_RS01810 WP_140222245.1 382246..382572(-) (ssb) [Riemerella anatipestifer strain WJ4]
ATGAAAAACAAGGTTCAACTTATTGGTAATGTAGGTAACACACCAGAGATTAAAGAGGTTAATAACACTAAAGTAGCTCA
TCTTTCTATAGCTACAAATGAAGTTTACAAAAATGCACAAGGAGAAAGAGTAGAGCAGACGGAATGGCATAAAGTAGTGG
CTTGGGGAGGACTAGCAGAAATTATAGAAAAGTATGTTACTAAAGGTAAAGAGATAGCTGTTGAGGGTAAATTAACCTAC
CGAAGTTATGATGATAAAGAAGGCAACAAACGCTATGTTACAGAAATTGTAGCCAACGATATTTTACTTTTAGGAAGGGC
AAAATAA
ATGAAAAACAAGGTTCAACTTATTGGTAATGTAGGTAACACACCAGAGATTAAAGAGGTTAATAACACTAAAGTAGCTCA
TCTTTCTATAGCTACAAATGAAGTTTACAAAAATGCACAAGGAGAAAGAGTAGAGCAGACGGAATGGCATAAAGTAGTGG
CTTGGGGAGGACTAGCAGAAATTATAGAAAAGTATGTTACTAAAGGTAAAGAGATAGCTGTTGAGGGTAAATTAACCTAC
CGAAGTTATGATGATAAAGAAGGCAACAAACGCTATGTTACAGAAATTGTAGCCAACGATATTTTACTTTTAGGAAGGGC
AAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
43.363 |
100 |
0.454 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.81 |
97.222 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.857 |
97.222 |
0.417 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.857 |
97.222 |
0.417 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.857 |
97.222 |
0.417 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.857 |
97.222 |
0.417 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.857 |
97.222 |
0.417 |
| ssb | Glaesserella parasuis strain SC1401 |
42.308 |
96.296 |
0.407 |
| ssb | Neisseria meningitidis MC58 |
41.346 |
96.296 |
0.398 |
| ssb | Neisseria gonorrhoeae MS11 |
41.346 |
96.296 |
0.398 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40.952 |
97.222 |
0.398 |
| ssbA | Streptococcus mutans UA159 |
39.048 |
97.222 |
0.38 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
40.625 |
88.889 |
0.361 |