Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VS_RS14620 Genome accession   NC_011753
Coordinates   3259468..3260580 (-) Length   370 a.a.
NCBI ID   WP_012605087.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3254468..3265580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS14590 (VS_3118) hemF 3255010..3255927 (-) 918 WP_012605083.1 oxygen-dependent coproporphyrinogen oxidase -
  VS_RS14595 (VS_3119) - 3255947..3256504 (-) 558 WP_041472946.1 L-threonylcarbamoyladenylate synthase -
  VS_RS14600 (VS_3120) purE 3256700..3257185 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VS_RS14605 (VS_3121) - 3257191..3258321 (+) 1131 WP_012605085.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VS_RS14610 (VS_3122) - 3258407..3258976 (-) 570 WP_012605086.1 type I DNA topoisomerase -
  VS_RS14615 (VS_3123) - 3258989..3259465 (-) 477 WP_004735774.1 DUF494 family protein -
  VS_RS14620 (VS_3124) dprA 3259468..3260580 (-) 1113 WP_012605087.1 DNA-processing protein DprA Machinery gene
  VS_RS14625 (VS_3125) - 3260577..3261668 (-) 1092 WP_012605088.1 LysM peptidoglycan-binding domain-containing protein -
  VS_RS14630 (VS_3126) def 3261809..3262321 (+) 513 WP_041472947.1 peptide deformylase -
  VS_RS14635 (VS_3127) fmt 3262360..3263325 (+) 966 WP_012605090.1 methionyl-tRNA formyltransferase -
  VS_RS14640 (VS_3128) rsmB 3263445..3264725 (+) 1281 WP_009848098.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40063.78 Da        Isoelectric Point: 6.8792

>NTDB_id=32304 VS_RS14620 WP_012605087.1 3259468..3260580(-) (dprA) [Vibrio atlanticus]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPFNIVGYSSQQLQAIGLSAKQISYLGEQAPREVEACLAWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGFIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPNAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPSMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=32304 VS_RS14620 WP_012605087.1 3259468..3260580(-) (dprA) [Vibrio atlanticus]
GTGAATGAGCAACAACTGAGCGCTTGGCTAACTCTAAGTTTTGTACCGCAATTGGGTGGCAAGCGACTTTCTCGACTGCT
GAGCATTGATTCTCCTTTTAATATTGTTGGCTACTCAAGCCAGCAACTGCAAGCAATTGGCTTGTCAGCTAAGCAAATCT
CCTATTTAGGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGCGTGGCAAGCAAGACAACCCAACCATCACATTATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTCAATGAGACCGCCTCTGCGCCGAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAACCTCAAATCGCGATGGTTGGCAGTCGTAATGCCAGCCTCGAAGGGTTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTTATCGTTACGAGTGGCTTAGCACTAGGTATTGATGGTTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTCGCGGTTTTAGGCTCTGGCTTAGATTCCATTTACCCTGCACGGCACAGAAACTT
AGCCGATAGAATCTGCGAAAATGGTGCGCTGATTTCAGAGTTTCGTCCAAACGCAAAACCACGACCTGAACATTTCCCTC
GGCGTAACCGTATTATAAGTGGGTTATCGCTCGGAACCTTGGTAGTTGAGGCAGCTGAAAAGAGTGGCTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGTCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGTCGCGGGGGCAA
CAGTTTAATCAAAGCTGGAGCATGCTTGGTACAGAGTGCACAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATCGATCAGCAACCTAGCTTGTTCGAACCTACGCCCAGTATGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.209

99.73

0.67
  dprA Vibrio cholerae strain A1552

58.289

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.043

100

0.473
  dprA Haemophilus influenzae Rd KW20

45.104

91.081

0.411
  dprA Legionella pneumophila strain ERS1305867

46.341

88.649

0.411
  dprA Neisseria meningitidis MC58

38.035

100

0.408
  dprA Neisseria meningitidis strain C311

38.035

100

0.408
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.397
  dprA Neisseria gonorrhoeae MS11

37.215

100

0.397
  dprA Acinetobacter baumannii strain A118

42.202

88.378

0.373
  dprA Acinetobacter baumannii D1279779

41.818

89.189

0.373
  dprA Acinetobacter baylyi ADP1

40.299

90.541

0.365

Multiple sequence alignment