Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   E6P00_RS27290 Genome accession   NZ_CP040127
Coordinates   5233434..5233901 (-) Length   155 a.a.
NCBI ID   WP_058007099.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA298     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5228434..5238901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6P00_RS27270 (E6P00_27270) ampD 5229175..5229741 (-) 567 WP_009875882.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  E6P00_RS27275 (E6P00_27275) - 5229892..5232147 (-) 2256 WP_019726810.1 DUF1631 domain-containing protein -
  E6P00_RS27280 (E6P00_27280) nadC 5232433..5233281 (+) 849 WP_003116246.1 carboxylating nicotinate-nucleotide diphosphorylase -
  E6P00_RS27290 (E6P00_27290) comP 5233434..5233901 (-) 468 WP_058007099.1 pilin Machinery gene
  E6P00_RS27295 (E6P00_27295) pilB 5234132..5235832 (+) 1701 WP_003120945.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E6P00_RS27300 (E6P00_27300) pilC 5235836..5237053 (+) 1218 WP_010792214.1 type II secretion system F family protein Machinery gene
  E6P00_RS27305 (E6P00_27305) pilD 5237056..5237928 (+) 873 WP_019726811.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  E6P00_RS27310 (E6P00_27310) coaE 5237925..5238536 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  E6P00_RS27315 (E6P00_27315) yacG 5238533..5238733 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 15888.24 Da        Isoelectric Point: 8.4684

>NTDB_id=320146 E6P00_RS27290 WP_058007099.1 5233434..5233901(-) (comP) [Pseudomonas aeruginosa strain PA298]
MKAAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTARAQLSEAMTLASGLKTKVSDIFSQDGSCPANTAATAGIEKDTDI
NGKYVAKVTTGGTAAASGGCTIVATMKASDVATPLRGKTLTLTLGNADKGSYTWACTSNADNKYLPKTCQTATTP

Nucleotide


Download         Length: 468 bp        

>NTDB_id=320146 E6P00_RS27290 WP_058007099.1 5233434..5233901(-) (comP) [Pseudomonas aeruginosa strain PA298]
ATGAAAGCTGCTCAAAAAGGCTTTACCTTGATCGAATTGATGATCGTGGTCGCGATCATCGGTATTCTGGCTGCCATCGC
TATTCCAGCGTATCAGGACTACACCGCACGCGCTCAGCTTAGCGAAGCCATGACCCTGGCCAGTGGTCTCAAGACGAAAG
TGAGCGATATCTTCTCTCAGGATGGGTCCTGCCCGGCTAATACTGCTGCCACGGCAGGCATCGAGAAAGATACCGACATC
AACGGCAAGTATGTTGCCAAGGTAACAACTGGTGGCACCGCAGCTGCGTCTGGTGGTTGCACTATCGTTGCTACTATGAA
AGCCTCTGATGTGGCTACTCCTCTGAGGGGGAAAACTCTGACTTTGACTCTAGGAAATGCTGACAAGGGTTCTTACACTT
GGGCCTGTACTTCCAACGCAGATAACAAGTACCTGCCAAAAACCTGCCAGACTGCTACCACTCCGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)

Pilin (bacterial filament) (Pilin)

(36-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

47.059

98.71

0.465
  pilE Neisseria gonorrhoeae strain FA1090

42.105

100

0.465
  pilE Neisseria gonorrhoeae MS11

42.515

100

0.458
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

41.176

100

0.452
  pilA/pilA1 Eikenella corrodens VA1

41.975

100

0.439
  pilA2 Legionella pneumophila str. Paris

45.578

94.839

0.432
  pilA2 Legionella pneumophila strain ERS1305867

44.218

94.839

0.419
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.333

96.774

0.419
  pilA Pseudomonas aeruginosa PAK

41.722

97.419

0.406
  pilA Ralstonia pseudosolanacearum GMI1000

41.06

97.419

0.4
  pilA Acinetobacter nosocomialis M2

55.357

72.258

0.4
  pilA Acinetobacter baumannii strain A118

37.5

98.065

0.368