Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   D0Y85_RS16170 Genome accession   NZ_CP031741
Coordinates   3519932..3520375 (-) Length   147 a.a.
NCBI ID   WP_117311246.1    Uniprot ID   -
Organism   Stenotrophomonas sp. G4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3514932..3525375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Y85_RS16155 pilR 3515872..3517245 (+) 1374 WP_117311240.1 sigma-54 dependent transcriptional regulator Regulator
  D0Y85_RS16160 pilB 3517443..3519170 (-) 1728 WP_117311242.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0Y85_RS16165 - 3519392..3519802 (-) 411 WP_117311244.1 pilin -
  D0Y85_RS16170 comP 3519932..3520375 (-) 444 WP_117311246.1 pilin Machinery gene
  D0Y85_RS16175 pilC 3520724..3521983 (+) 1260 WP_117311249.1 type II secretion system F family protein Machinery gene
  D0Y85_RS16180 - 3521992..3522855 (+) 864 WP_025874291.1 A24 family peptidase -
  D0Y85_RS16185 coaE 3522867..3523478 (+) 612 WP_117311250.1 dephospho-CoA kinase -
  D0Y85_RS16190 - 3523531..3523917 (-) 387 WP_117311251.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 14980.17 Da        Isoelectric Point: 4.7570

>NTDB_id=310971 D0Y85_RS16170 WP_117311246.1 3519932..3520375(-) (comP) [Stenotrophomonas sp. G4]
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYTVRARVSEGLTLASAAKTIVAENASNGSATLGQGYTFDAATAGTKNV
DTIAVDDGSGVISVAMKDNAKAVAFTLTPESGGAALVAGTVPGDVITWKCEVASAANNKYVPAECRI

Nucleotide


Download         Length: 444 bp        

>NTDB_id=310971 D0Y85_RS16170 WP_117311246.1 3519932..3520375(-) (comP) [Stenotrophomonas sp. G4]
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCCATTCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCGTCCGCGCTCGCGTGTCTGAAGGTCTGACCCTGGCTTCGGCCGCCAAGACCATCGTGG
CTGAAAACGCCAGCAACGGCTCTGCCACTCTCGGCCAAGGCTACACCTTCGACGCCGCTACTGCTGGCACCAAAAACGTC
GATACGATCGCTGTTGATGATGGCAGTGGCGTGATCTCGGTTGCGATGAAGGACAACGCCAAGGCCGTTGCATTTACCCT
GACCCCGGAAAGCGGCGGCGCTGCGCTCGTAGCAGGCACCGTGCCGGGTGATGTCATCACTTGGAAGTGCGAAGTGGCTT
CCGCCGCGAACAACAAGTATGTGCCGGCCGAGTGCCGCATCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-146)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

50

100

0.537
  pilA2 Legionella pneumophila strain ERS1305867

50.345

98.639

0.497
  pilA2 Legionella pneumophila str. Paris

50.345

98.639

0.497
  pilA Ralstonia pseudosolanacearum GMI1000

45.86

100

0.49
  pilA Pseudomonas aeruginosa PAK

39.744

100

0.422
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.355

100

0.415
  pilA/pilA1 Eikenella corrodens VA1

38.217

100

0.408
  pilA Acinetobacter baumannii strain A118

42.336

93.197

0.395
  pilE Neisseria gonorrhoeae strain FA1090

36.478

100

0.395

Multiple sequence alignment