Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D0Y85_RS16175 Genome accession   NZ_CP031741
Coordinates   3520724..3521983 (+) Length   419 a.a.
NCBI ID   WP_117311249.1    Uniprot ID   -
Organism   Stenotrophomonas sp. G4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3515724..3526983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Y85_RS16155 pilR 3515872..3517245 (+) 1374 WP_117311240.1 sigma-54 dependent transcriptional regulator Regulator
  D0Y85_RS16160 pilB 3517443..3519170 (-) 1728 WP_117311242.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0Y85_RS16165 - 3519392..3519802 (-) 411 WP_117311244.1 pilin -
  D0Y85_RS16170 comP 3519932..3520375 (-) 444 WP_117311246.1 pilin Machinery gene
  D0Y85_RS16175 pilC 3520724..3521983 (+) 1260 WP_117311249.1 type II secretion system F family protein Machinery gene
  D0Y85_RS16180 - 3521992..3522855 (+) 864 WP_025874291.1 A24 family peptidase -
  D0Y85_RS16185 coaE 3522867..3523478 (+) 612 WP_117311250.1 dephospho-CoA kinase -
  D0Y85_RS16190 - 3523531..3523917 (-) 387 WP_117311251.1 hypothetical protein -
  D0Y85_RS16195 - 3524431..3525801 (-) 1371 WP_032975180.1 HAMP domain-containing sensor histidine kinase -
  D0Y85_RS16200 - 3525764..3526441 (-) 678 WP_025874286.1 response regulator transcription factor -
  D0Y85_RS16205 - 3526450..3526923 (-) 474 WP_117311252.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45767.28 Da        Isoelectric Point: 10.1604

>NTDB_id=310972 D0Y85_RS16175 WP_117311249.1 3520724..3521983(+) (pilC) [Stenotrophomonas sp. G4]
MSVSRSAIKKEPVARATMELQPFVWQGTDKRGVKMKGEQLAKNANLVRAELRRQGINPGQVKPKPKPLFGQAGKAVSPKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVEGIRTDIEGGSSLYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEGLKGKIKKALFYPAMVVVVALLVSAILLIFVVPQFEDVFKSFGAELPAFTQLIVNLSRFMVSWWWL
IAIVMCGTGVGFVMAYKRSLKMQHTMDRLILKVPVIGQIMNNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQTALFPHMVIQMTGIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=310972 D0Y85_RS16175 WP_117311249.1 3520724..3521983(+) (pilC) [Stenotrophomonas sp. G4]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCAGTGGCGCGTGCCACCATGGAGTTGCAGCCGTTTGTCTGGCAGGG
GACCGACAAGCGTGGCGTGAAGATGAAGGGCGAGCAGTTGGCTAAGAATGCCAATTTGGTACGCGCCGAGCTTCGCCGGC
AGGGGATCAACCCTGGTCAGGTCAAGCCCAAGCCGAAACCGCTGTTCGGCCAGGCCGGCAAAGCGGTCAGCCCAAAGGAC
ATCGCGTTCTTCAGCCGACAGATGGCCACCATGATGAAGTCCGGCGTGCCGATCGTCTCGGCGCTGGAGATCATTGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGAAGGCATCCGCACCGATATCGAGGGCGGTTCCTCCCTGTACGAGG
CGGTCAGCAAGCACCCGGTGCAGTTCGATGAGCTCTACCGCAACCTCGTGCGCGCCGGTGAAGGTGCCGGTGTGCTGGAA
ACTGTGCTGGACACAGTGGCCACCTACAAGGAAAACATCGAAGGCCTGAAGGGCAAGATCAAGAAGGCCCTGTTCTACCC
GGCGATGGTGGTGGTGGTGGCCCTGCTGGTAAGCGCCATCCTGCTGATCTTTGTCGTGCCGCAGTTCGAAGACGTGTTCA
AAAGTTTCGGCGCGGAACTGCCGGCCTTTACCCAACTGATCGTCAACCTATCCCGGTTCATGGTGTCGTGGTGGTGGTTA
ATTGCCATTGTCATGTGTGGCACCGGTGTGGGCTTCGTCATGGCCTACAAGCGATCACTGAAGATGCAGCACACCATGGA
TCGTCTGATCCTGAAGGTCCCGGTGATCGGACAGATCATGAACAACAGTGCGATCGCCCGCTTTGCCCGCACCACGGCGG
TGACCTTCAAGGCCGGCGTCCCCCTTGTGGAAGCCCTCGGCATCGTGGCCGGCGCCACCGGCAACAAGGTCTACGAGGAA
GCCGTGCTGCGCATGCGCGATGACGTATCGGTGGGCTACCCGGTCAACATGGCGATGAAACAAACCGCCCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCGCTGGATACCATGCTGTTCAAGGTAGCCGAGTACTATG
AGCAGGAAGTCAACAATGCAGTGGATGCCCTGAGCAGCCTGCTCGAACCGATGATCATGGTCTTCATCGGCGTAGTCGTA
GGCGGTATGGTCATCGGCATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.135

95.227

0.516
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Acinetobacter baylyi ADP1

50.739

96.897

0.492
  pilC Acinetobacter baumannii D1279779

50.369

97.136

0.489
  pilG Neisseria gonorrhoeae MS11

43.467

94.988

0.413
  pilG Neisseria meningitidis 44/76-A

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

42.118

96.897

0.408
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394
  pilC Thermus thermophilus HB27

36.386

99.045

0.36

Multiple sequence alignment