Detailed information NTG0310969

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D0Y85_RS16155
• Genome accession: NZ_CP031741
• Coordinates: 3515872..3517245 (+)
• Length: 457 a.a.
• NCBI ID: WP_117311240.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. G4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3510872..3522245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0Y85_RS16140	sucD	3511761..3512636 (-)	876	WP_017356169.1	succinate--CoA ligase subunit alpha	-
D0Y85_RS16145	sucC	3512658..3513827 (-)	1170	WP_025874298.1	ADP-forming succinate--CoA ligase subunit beta	-
D0Y85_RS16150	-	3514204..3515817 (+)	1614	WP_117311237.1	ATP-binding protein	-
D0Y85_RS16155	pilR	3515872..3517245 (+)	1374	WP_117311240.1	sigma-54 dependent transcriptional regulator	Regulator
D0Y85_RS16160	pilB	3517443..3519170 (-)	1728	WP_117311242.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D0Y85_RS16165	-	3519392..3519802 (-)	411	WP_117311244.1	pilin	-
D0Y85_RS16170	comP	3519932..3520375 (-)	444	WP_117311246.1	pilin	Machinery gene
D0Y85_RS16175	pilC	3520724..3521983 (+)	1260	WP_117311249.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49654.94 Da
• Isoelectric Point: 6.6449

>NTDB_id=310969 D0Y85_RS16155 WP_117311240.1 3515872..3517245(+) (pilR) [Stenotrophomonas sp. G4]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDITVLRGLVKHALELNNSERPVAGPAAEQAARLLGESPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPSEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILSRLARSHGRATPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRSPGSAAHAEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=310969 D0Y85_RS16155 WP_117311240.1 3515872..3517245(+) (pilR) [Stenotrophomonas sp. G4]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGATATCCGCGAACTGCTGGTGTTGACCCTCGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGTGCTTTCGATTTCGTCAGCAAGCCGGT
GGACATCACCGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCCCCGTTGCCGGCCCCGCCG
CCGAACAGGCCGCACGCCTGCTGGGCGAATCGCCGGCGATGGACGTGCTGCGCGCCACCATCGGCAAGGTTGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAATCCGGGGTGGGCAAGGAACTGGTTGCACGCACCATCCACGCCCAGGGTGCACG
CGCCGCTGGGCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCACCGAGTTGATGGAGAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCACCGGCGCCCATGCCGACAAGCCGGGACTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAATCGGTGCGCGCCGTCGGCGCCCC
CAGCGAAGAACCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAAGACGGGCGTTTCC
GCCACGACCTCTACTACCGCATCAACGTCATCGAACTGCGCGTACCACCGCTGCGCGAGCGTCGCCAGGACCTGCCCGCA
CTGGCCGCGTCGATCCTGTCGCGGCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGACGC
GTTGGCCCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCGCTGGCCGAGGAAG
ACCGTATCGGTGCCGACGACCTGCGCCTGCCGCAGCATGCGCCGCGCTCACCGGGCAGCGCCGCCCACGCTGAAGCGGTG
GTGGATCTGCATCCGGGCAGTGCCGCCCTGCCCTCGTATATCGAACAGCTTGAGCGCAGCGCCATCCAGCGCGCGCTGGA
GGAAAACCGCTGGAACAAGACCCGCACTGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-114)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.596	99.781	0.635
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49