Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   SaO408_RS04235 Genome accession   NZ_CP038270
Coordinates   838095..840080 (+) Length   661 a.a.
NCBI ID   WP_000229259.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O408 isolate B115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 833095..845080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO408_RS04205 - 834143..834241 (+) 99 Protein_783 hypothetical protein -
  SaO408_RS04210 (SaO408_0784) prfB 834411..835521 (+) 1111 WP_010956549.1 peptide chain release factor 2 -
  SaO408_RS04215 - 835675..835782 (+) 108 WP_078064894.1 hypothetical protein -
  SaO408_RS04220 (SaO408_0785) - 835930..836769 (+) 840 WP_000749389.1 CHAP domain-containing protein -
  SaO408_RS04225 (SaO408_0786) - 836943..837593 (+) 651 WP_000538143.1 YfbR-like 5'-deoxynucleotidase -
  SaO408_RS04230 (SaO408_0787) - 837590..837826 (+) 237 WP_000638419.1 CsbA family protein -
  SaO408_RS04235 (SaO408_0788) uvrB 838095..840080 (+) 1986 WP_000229259.1 excinuclease ABC subunit UvrB Machinery gene
  SaO408_RS04240 (SaO408_0789) uvrA 840088..842934 (+) 2847 WP_000662694.1 excinuclease ABC subunit UvrA Machinery gene
  SaO408_RS04245 (SaO408_0790) hprK 843531..844463 (+) 933 WP_000958223.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76593.26 Da        Isoelectric Point: 5.0121

>NTDB_id=310758 SaO408_RS04235 WP_000229259.1 838095..840080(+) (uvrB) [Staphylococcus aureus strain O408 isolate B115]
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFK
EFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFESDDVIIIASVSCIYGLGNPEEYKDLV
VSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKER
EHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPL
GSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGP
YEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE
IKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTD
SMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAK
DLDFEKATELRDMLFELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=310758 SaO408_RS04235 WP_000229259.1 838095..840080(+) (uvrB) [Staphylococcus aureus strain O408 isolate B115]
ATGGTTGAACATTATCCTTTTAAAATACATTCTGATTTTGAGCCTCAAGGTGACCAACCGCAAGCAATTAAGGAAATCGT
GGAAGGTATTAAAGCGGGGAAAAGACATCAAACTTTATTAGGTGCAACTGGCACAGGGAAAACATTTACGATGAGTAATG
TTATTAAAGAAGTTGGGAAACCAACGTTAATTATCGCGCATAACAAAACATTAGCAGGACAATTATATAGTGAGTTTAAA
GAATTTTTTCCTGAAAACAGGGTGGAATACTTTGTAAGTTACTATGATTATTATCAACCTGAGGCATACGTACCGTCTAC
TGACACTTTTATTGAAAAAGATGCTTCAATCAATGATGAAATTGATCAACTTCGACATTCTGCTACAAGTGCATTATTTG
AAAGCGATGATGTAATTATTATTGCTAGTGTAAGTTGTATATATGGTTTAGGTAATCCTGAAGAATATAAAGATTTAGTA
GTAAGTGTTCGAGTTGGTATGGAAATGGATAGAAGCGAATTACTTAGAAAACTTGTAGATGTGCAATATACACGAAATGA
CATCGATTTCCAACGAGGAACGTTTCGAGTGCGTGGTGATGTAGTTGAAATATTCCCAGCCTCTAAAGAAGAACTTTGTA
TAAGGGTTGAGTTTTTCGGCGATGAGATTGACCGTATTCGAGAAGTTAACTACCTAACAGGTGAAGTGTTGAAAGAAAGA
GAACATTTTGCGATTTTCCCAGCTTCTCACTTCGTAACACGTGAAGAAAAGTTGAAAGTTGCGATTGAACGTATTGAAAA
AGAATTGGAAGAACGATTGAAAGAATTACGAGATGAGAATAAATTACTAGAAGCGCAAAGGTTAGAACAGCGTACCAACT
ATGATTTAGAAATGATGCGAGAAATGGGGTTCTGTTCAGGAATTGAAAACTATTCAGTACATTTAACGTTGCGACCACTA
GGTTCGACACCATATACTTTATTGGATTACTTTGGCGATGATTGGTTAATAATGATTGATGAATCACATGTGACGTTACC
GCAAGTTCGTGGCATGTATAACGGAGACAGAGCACGAAAACAAGTTTTAGTTGATCATGGATTTAGATTACCAAGTGCGT
TAGATAACCGCCCACTTAAATTTGAAGAATTTGAAGAAAAGACGAAACAACTTGTGTATGTATCTGCAACGCCTGGTCCA
TACGAAATTGAACATACGGATAAGATGGTTGAACAAATTATTCGTCCTACTGGTTTACTGGACCCTAAGATTGAGGTTAG
ACCTACTGAAAATCAAATTGACGATTTATTAAGTGAAATTCAAACAAGGGTTGAGCGTAATGAAAGAGTACTTGTTACAA
CGCTCACTAAAAAGATGAGTGAAGATTTAACCACATATATGAAAGAAGCAGGCATTAAAGTTAACTATCTACATTCTGAA
ATTAAAACATTAGAACGAATCGAAATAATTAGAGACTTACGAATGGGTACATATGATGTTATCGTAGGTATTAATTTATT
AAGAGAGGGTATTGATATACCAGAAGTTTCTCTAGTTGTCATATTAGATGCAGATAAAGAAGGATTTTTACGTTCTAACC
GCTCATTAATTCAAACAATAGGTAGAGCTGCGCGTAACGATAAAGGAGAAGTCATTATGTATGCCGATAAAATGACTGAT
TCGATGAAGTATGCAATTGATGAGACACAACGTCGTCGAGAAATACAGATGAAACATAATGAAAAACATGGTATTACACC
TAAAACAATTAATAAAAAAATACATGATTTAATTAGTGCTACTGTTGAAAATGACGAAAATAATGACAAAGCACAAACTG
TGATACCTAAGAAGATGACGAAAAAAGAACGTCAAAAGACAATCGACAATATAGAAAAAGAAATGAAACAAGCAGCGAAA
GATTTAGATTTCGAGAAAGCTACAGAATTAAGAGATATGTTATTTGAATTAAAAGCAGAAGGGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(434-546)

Type III restriction enzyme, res subunit (ResIII)

(14-121)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(626-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

67.534

98.79

0.667
  uvrB Streptococcus pneumoniae D39

67.534

98.79

0.667
  uvrB Streptococcus pneumoniae TIGR4

67.534

98.79

0.667

Multiple sequence alignment