Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   CH582_RS00270 Genome accession   NZ_CP031689
Coordinates   56042..56758 (-) Length   238 a.a.
NCBI ID   WP_012055311.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P621-7028     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51042..61758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH582_RS00250 (CH582_00250) nrdR 51134..51583 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  CH582_RS00255 (CH582_00255) recC 51638..55018 (-) 3381 WP_105894717.1 exodeoxyribonuclease V subunit gamma -
  CH582_RS00260 (CH582_00260) comQ 55064..55351 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  CH582_RS00265 (CH582_00265) comP 55344..56027 (-) 684 WP_105894718.1 DUF2572 family protein Machinery gene
  CH582_RS00270 (CH582_00270) comO 56042..56758 (-) 717 WP_012055311.1 PulJ/GspJ family protein Machinery gene
  CH582_RS00275 (CH582_00275) comN 56758..57270 (-) 513 WP_005651545.1 pilus assembly FimT family protein Machinery gene
  CH582_RS00280 (CH582_00280) suhB 57470..58273 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  CH582_RS00285 (CH582_00285) nrfE 58382..60289 (+) 1908 WP_105894719.1 heme lyase NrfEFG subunit NrfE -
  CH582_RS00290 (CH582_00290) - 60289..60819 (+) 531 WP_005648041.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26745.09 Da        Isoelectric Point: 9.5508

>NTDB_id=310146 CH582_RS00270 WP_012055311.1 56042..56758(-) (comO) [Haemophilus influenzae strain P621-7028]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCVGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=310146 CH582_RS00270 WP_012055311.1 56042..56758(-) (comO) [Haemophilus influenzae strain P621-7028]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATCTCACTGTCTTTGTCGTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGCTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCACCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTGTTGGCAAAGGTTCGCCAAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment