Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DK878_RS02240 | Genome accession | NZ_CP031379 |
| Coordinates | 427329..427727 (+) | Length | 132 a.a. |
| NCBI ID | WP_022540565.1 | Uniprot ID | A0A0K2E4A3 |
| Organism | Streptococcus suis strain ISU2660 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 418892..441934 | 427329..427727 | within | 0 |
Gene organization within MGE regions
Location: 418892..441934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK878_RS02155 (DK878_02235) | - | 418892..420049 (-) | 1158 | WP_013730163.1 | site-specific integrase | - |
| DK878_RS02160 (DK878_02240) | - | 420246..420977 (-) | 732 | WP_013730164.1 | hypothetical protein | - |
| DK878_RS02165 (DK878_02245) | - | 421025..421408 (-) | 384 | WP_013730165.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DK878_RS02170 (DK878_02250) | - | 421415..421930 (-) | 516 | WP_228476706.1 | helix-turn-helix domain-containing protein | - |
| DK878_RS02175 (DK878_02255) | - | 421980..422180 (+) | 201 | WP_002937001.1 | helix-turn-helix domain-containing protein | - |
| DK878_RS02180 (DK878_02260) | - | 422250..422576 (+) | 327 | WP_013730166.1 | hypothetical protein | - |
| DK878_RS02185 (DK878_02265) | - | 422650..422904 (+) | 255 | WP_013730167.1 | hypothetical protein | - |
| DK878_RS02190 (DK878_02270) | - | 422960..423193 (+) | 234 | WP_226960628.1 | hypothetical protein | - |
| DK878_RS02195 | - | 423183..423335 (+) | 153 | WP_022540561.1 | hypothetical protein | - |
| DK878_RS02200 (DK878_02275) | - | 423340..423681 (+) | 342 | WP_013730169.1 | hypothetical protein | - |
| DK878_RS02205 (DK878_02280) | - | 423681..424160 (+) | 480 | WP_013730170.1 | siphovirus Gp157 family protein | - |
| DK878_RS02210 (DK878_02285) | - | 424157..424402 (+) | 246 | WP_013730171.1 | hypothetical protein | - |
| DK878_RS02215 (DK878_02290) | - | 424383..424847 (+) | 465 | WP_013730172.1 | hypothetical protein | - |
| DK878_RS02220 (DK878_02295) | - | 424816..425988 (+) | 1173 | WP_013730173.1 | DEAD/DEAH box helicase family protein | - |
| DK878_RS02225 (DK878_02300) | - | 426062..426328 (+) | 267 | WP_226960629.1 | hypothetical protein | - |
| DK878_RS02230 (DK878_02305) | - | 426338..427036 (+) | 699 | WP_013730175.1 | ERF family protein | - |
| DK878_RS02235 (DK878_02310) | - | 427036..427332 (+) | 297 | WP_022540564.1 | hypothetical protein | - |
| DK878_RS02240 (DK878_02315) | ssbA | 427329..427727 (+) | 399 | WP_022540565.1 | single-stranded DNA-binding protein | Machinery gene |
| DK878_RS02245 (DK878_02320) | - | 427738..428565 (+) | 828 | WP_053866125.1 | bifunctional DNA primase/polymerase | - |
| DK878_RS02250 (DK878_02325) | - | 428549..429928 (+) | 1380 | WP_079253058.1 | virulence-associated E family protein | - |
| DK878_RS02255 | - | 430306..430461 (+) | 156 | WP_013730179.1 | hypothetical protein | - |
| DK878_RS02260 (DK878_02330) | - | 430458..430766 (+) | 309 | WP_013730180.1 | DUF1372 family protein | - |
| DK878_RS02265 (DK878_02335) | - | 430768..430983 (+) | 216 | WP_013730181.1 | hypothetical protein | - |
| DK878_RS02270 (DK878_02340) | - | 431172..431486 (+) | 315 | WP_013730182.1 | hypothetical protein | - |
| DK878_RS02275 (DK878_02345) | - | 431559..431993 (+) | 435 | WP_002937915.1 | DUF1492 domain-containing protein | - |
| DK878_RS02280 (DK878_02350) | - | 432090..432437 (+) | 348 | WP_013730183.1 | HNH endonuclease | - |
| DK878_RS02285 (DK878_02355) | - | 432526..432888 (+) | 363 | WP_105203945.1 | hypothetical protein | - |
| DK878_RS02290 (DK878_02360) | - | 432885..434150 (+) | 1266 | WP_013730185.1 | phage portal protein | - |
| DK878_RS02295 | - | 434143..435363 (+) | 1221 | WP_013730186.1 | hypothetical protein | - |
| DK878_RS02300 (DK878_02370) | - | 435368..435601 (+) | 234 | WP_022540567.1 | hypothetical protein | - |
| DK878_RS02305 (DK878_02375) | - | 435803..437005 (-) | 1203 | WP_025310401.1 | IS110 family transposase | - |
| DK878_RS10825 (DK878_02380) | - | 437345..437600 (-) | 256 | Protein_419 | IS110 family transposase | - |
| DK878_RS10830 | - | 437909..438196 (+) | 288 | Protein_420 | ISL3 family transposase | - |
| DK878_RS02310 (DK878_02385) | - | 438720..439358 (-) | 639 | WP_009909540.1 | MBL fold metallo-hydrolase | - |
| DK878_RS02315 (DK878_02390) | - | 439466..441934 (+) | 2469 | WP_022540595.1 | bifunctional DnaQ family exonuclease/ATP-dependent helicase | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 14872.45 Da Isoelectric Point: 4.6583
>NTDB_id=306390 DK878_RS02240 WP_022540565.1 427329..427727(+) (ssbA) [Streptococcus suis strain ISU2660]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQDGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRGQQSNSQDGSFGNSSPMDIQDEDLPF
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQDGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRGQQSNSQDGSFGNSSPMDIQDEDLPF
Nucleotide
Download Length: 399 bp
>NTDB_id=306390 DK878_RS02240 WP_022540565.1 427329..427727(+) (ssbA) [Streptococcus suis strain ISU2660]
ATGATTAACAATGTAGTACTAGTGGGACGCATGACTCGTGATGCAGAACTTCGTTACACTCCGTCAAACCAGGCGGTTGC
GACTTTTACCTTGGCTGTCAATCGAAACTTCAAAAATCAAGATGGGGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGCATTCAGACTCGT
AGCTATGACAATCAACAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGTCGTGG
ACAACAGTCGAATTCTCAAGACGGATCATTTGGAAATTCAAGTCCTATGGATATCCAAGACGAAGATTTGCCGTTCTAG
ATGATTAACAATGTAGTACTAGTGGGACGCATGACTCGTGATGCAGAACTTCGTTACACTCCGTCAAACCAGGCGGTTGC
GACTTTTACCTTGGCTGTCAATCGAAACTTCAAAAATCAAGATGGGGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGCATTCAGACTCGT
AGCTATGACAATCAACAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGTCGTGG
ACAACAGTCGAATTCTCAAGACGGATCATTTGGAAATTCAAGTCCTATGGATATCCAAGACGAAGATTTGCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.907 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.674 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
49.242 |
100 |
0.492 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
46.212 |
100 |
0.462 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.455 |
100 |
0.455 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
45.455 |
100 |
0.455 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
45.455 |
100 |
0.455 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
45.455 |
100 |
0.455 |
| ssbB/cilA | Streptococcus mitis SK321 |
45.455 |
100 |
0.455 |
| ssbA | Streptococcus mutans UA159 |
44.697 |
100 |
0.447 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.128 |
82.576 |
0.447 |
| ssb | Vibrio cholerae strain A1552 |
29.48 |
100 |
0.386 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
48.113 |
80.303 |
0.386 |