Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EW996_RS02765 Genome accession   NZ_CP035882
Coordinates   570764..571501 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WS0115A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 565764..576501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW996_RS02735 yfiL 565923..566288 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  EW996_RS02740 aroF 566498..567568 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EW996_RS02745 tyrA 567579..568700 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EW996_RS02750 pheA 568743..569903 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  EW996_RS02755 pheL 570001..570048 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EW996_RS02760 raiA 570152..570493 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EW996_RS02765 comL 570764..571501 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EW996_RS02770 rluD 571636..572616 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EW996_RS02775 yfiH 572613..573344 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  EW996_RS02780 clpC 573474..576047 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=306358 EW996_RS02765 WP_000197686.1 570764..571501(-) (comL) [Escherichia coli strain WS0115A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=306358 EW996_RS02765 WP_000197686.1 570764..571501(-) (comL) [Escherichia coli strain WS0115A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment