Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | DGN16_RS16260 | Genome accession | NZ_CP029264 |
| Coordinates | 3743027..3743461 (-) | Length | 144 a.a. |
| NCBI ID | WP_007973901.1 | Uniprot ID | - |
| Organism | Xanthomonas citri pv. fuscans strain PR8F | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3738027..3748461
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DGN16_RS16250 (DGN16_16815) | pilR | 3739324..3740778 (+) | 1455 | WP_022558668.1 | sigma-54 dependent transcriptional regulator | Regulator |
| DGN16_RS16255 (DGN16_16825) | pilB | 3741228..3742964 (-) | 1737 | WP_022558667.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DGN16_RS16260 (DGN16_16830) | pilE | 3743027..3743461 (-) | 435 | WP_007973901.1 | pilin | Machinery gene |
| DGN16_RS16265 (DGN16_16835) | pilE | 3743537..3743977 (-) | 441 | WP_005934296.1 | pilin | Machinery gene |
| DGN16_RS16270 (DGN16_16840) | pilC | 3744304..3745560 (+) | 1257 | WP_007973903.1 | type II secretion system F family protein | Machinery gene |
| DGN16_RS16275 (DGN16_16845) | - | 3745567..3746430 (+) | 864 | WP_022558666.1 | A24 family peptidase | - |
| DGN16_RS16280 (DGN16_16850) | coaE | 3746444..3747052 (+) | 609 | WP_022558665.1 | dephospho-CoA kinase | - |
| DGN16_RS16285 | - | 3747525..3747671 (-) | 147 | WP_158526406.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14995.27 Da Isoelectric Point: 7.8193
>NTDB_id=291485 DGN16_RS16260 WP_007973901.1 3743027..3743461(-) (pilE) [Xanthomonas citri pv. fuscans strain PR8F]
MKARGFTLIELMIVVAIIAILAAIALPAYQDYLVRAQVAEGLSLASGAKVAVEEFHWAQSVSPTSNAQAGLGNADTIKGR
YVSSVTVGADGVITVAFATLGANESIRGSQLQLVPDWSVAGSTVWRCDGAGTTLQAKYLPKACR
MKARGFTLIELMIVVAIIAILAAIALPAYQDYLVRAQVAEGLSLASGAKVAVEEFHWAQSVSPTSNAQAGLGNADTIKGR
YVSSVTVGADGVITVAFATLGANESIRGSQLQLVPDWSVAGSTVWRCDGAGTTLQAKYLPKACR
Nucleotide
Download Length: 435 bp
>NTDB_id=291485 DGN16_RS16260 WP_007973901.1 3743027..3743461(-) (pilE) [Xanthomonas citri pv. fuscans strain PR8F]
GTGAAAGCACGTGGATTCACTTTGATTGAGTTGATGATTGTAGTTGCGATCATTGCAATTCTTGCTGCAATTGCATTGCC
CGCGTATCAGGATTACCTGGTGAGAGCGCAGGTGGCAGAAGGGTTAAGTCTTGCCTCGGGTGCCAAGGTAGCAGTAGAGG
AGTTTCACTGGGCCCAAAGCGTCTCTCCGACATCAAACGCTCAGGCTGGATTGGGTAACGCTGATACCATTAAAGGTCGA
TATGTTTCGTCCGTTACCGTTGGCGCGGATGGCGTCATAACTGTCGCGTTCGCTACTTTAGGCGCGAACGAATCTATTCG
AGGGTCGCAGTTGCAACTGGTGCCTGACTGGTCTGTCGCAGGCTCGACAGTGTGGCGATGCGATGGGGCCGGCACGACGC
TGCAGGCAAAATATCTACCCAAAGCTTGCAGATGA
GTGAAAGCACGTGGATTCACTTTGATTGAGTTGATGATTGTAGTTGCGATCATTGCAATTCTTGCTGCAATTGCATTGCC
CGCGTATCAGGATTACCTGGTGAGAGCGCAGGTGGCAGAAGGGTTAAGTCTTGCCTCGGGTGCCAAGGTAGCAGTAGAGG
AGTTTCACTGGGCCCAAAGCGTCTCTCCGACATCAAACGCTCAGGCTGGATTGGGTAACGCTGATACCATTAAAGGTCGA
TATGTTTCGTCCGTTACCGTTGGCGCGGATGGCGTCATAACTGTCGCGTTCGCTACTTTAGGCGCGAACGAATCTATTCG
AGGGTCGCAGTTGCAACTGGTGCCTGACTGGTCTGTCGCAGGCTCGACAGTGTGGCGATGCGATGGGGCCGGCACGACGC
TGCAGGCAAAATATCTACCCAAAGCTTGCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria gonorrhoeae strain FA1090 |
44.586 |
100 |
0.486 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40.237 |
100 |
0.472 |
| pilE | Neisseria gonorrhoeae MS11 |
43.038 |
100 |
0.472 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.638 |
100 |
0.465 |
| pilA2 | Legionella pneumophila str. Paris |
45.833 |
100 |
0.458 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
45.833 |
100 |
0.458 |
| comP | Acinetobacter baylyi ADP1 |
40.909 |
100 |
0.437 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.735 |
100 |
0.417 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.865 |
100 |
0.41 |
| pilA | Pseudomonas aeruginosa PAK |
35.22 |
100 |
0.389 |
| pilA | Acinetobacter baumannii strain A118 |
36.879 |
97.917 |
0.361 |