Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DGN16_RS16270 Genome accession   NZ_CP029264
Coordinates   3744304..3745560 (+) Length   418 a.a.
NCBI ID   WP_007973903.1    Uniprot ID   A0AB34Q195
Organism   Xanthomonas citri pv. fuscans strain PR8F     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3739304..3750560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGN16_RS16250 (DGN16_16815) pilR 3739324..3740778 (+) 1455 WP_022558668.1 sigma-54 dependent transcriptional regulator Regulator
  DGN16_RS16255 (DGN16_16825) pilB 3741228..3742964 (-) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DGN16_RS16260 (DGN16_16830) pilE 3743027..3743461 (-) 435 WP_007973901.1 pilin Machinery gene
  DGN16_RS16265 (DGN16_16835) pilE 3743537..3743977 (-) 441 WP_005934296.1 pilin Machinery gene
  DGN16_RS16270 (DGN16_16840) pilC 3744304..3745560 (+) 1257 WP_007973903.1 type II secretion system F family protein Machinery gene
  DGN16_RS16275 (DGN16_16845) - 3745567..3746430 (+) 864 WP_022558666.1 A24 family peptidase -
  DGN16_RS16280 (DGN16_16850) coaE 3746444..3747052 (+) 609 WP_022558665.1 dephospho-CoA kinase -
  DGN16_RS16285 - 3747525..3747671 (-) 147 WP_158526406.1 hypothetical protein -
  DGN16_RS16290 (DGN16_16860) - 3747668..3748765 (-) 1098 WP_046831597.1 IS5 family transposase -
  DGN16_RS16295 (DGN16_16865) - 3748895..3749875 (+) 981 WP_007975311.1 IS5-like element ISXfu2 family transposase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45939.35 Da        Isoelectric Point: 10.3003

>NTDB_id=291487 DGN16_RS16270 WP_007973903.1 3744304..3745560(+) (pilC) [Xanthomonas citri pv. fuscans strain PR8F]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=291487 DGN16_RS16270 WP_007973903.1 3744304..3745560(+) (pilC) [Xanthomonas citri pv. fuscans strain PR8F]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAATGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACTCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATTTCACCAAAAGAC
ATCGCATTCTTCAGCCGCCAGATGGCAACGATGATGAAGTCCGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
AGGGCACAAAAACCCTCGCATGAAAAAAATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGTTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAATCTGGTGCGCGCGGGCGAGGGTGCTGGCGTCTTGGAA
ACTGTCCTAGATACAGTTGCGAACTATAAAGAAAATATTGAGGCCCTTAAGGGCAAAATTAAAAAAGCCCTGTTTTATCC
TGCCATGGTAATGGCCGTCGCAATTATTGTTAGCGGCATACTATTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AAGGTTTTGGAGCAGAACTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAACGCTCACCGCGCATGCGCCACGGAATGGA
CAGGCTTGTTTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAATAGCTCGATTGCTCGATTTGCCCGAACCACCGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGTATTGTTGCCGGTGCGACTGGCAATAAGGTATATGAGGAA
GCTGTGCTGCGGATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCCATGAAGCAAGTAAACCTGTTCCCGCA
TATGGTGATTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTCGCGGAGTATTTCG
AGCAGGAAGTAAATAATGCCGTGGATGCGCTAAGCAGCCTATTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

53.102

96.411

0.512
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.737

0.505
  pilC Acinetobacter baumannii D1279779

52.109

96.411

0.502
  pilC Legionella pneumophila strain ERS1305867

51.478

97.129

0.5
  pilG Neisseria gonorrhoeae MS11

45.5

95.694

0.435
  pilG Neisseria meningitidis 44/76-A

45

95.694

0.431
  pilC Vibrio cholerae strain A1552

42.677

94.737

0.404
  pilC Vibrio campbellii strain DS40M4

39.646

94.737

0.376
  pilC Thermus thermophilus HB27

37.94

95.215

0.361

Multiple sequence alignment