Detailed information NTG0281831

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: LL14B4_RS11850
• Genome accession: NZ_CP028160
• Coordinates: 2375236..2375619 (-)
• Length: 127 a.a.
• NCBI ID: WP_080735951.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain 14B4
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2370236..2380619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL14B4_RS11810 (LL14B4_11800)	-	2370772..2371581 (-)	810	WP_033900712.1	metal ABC transporter permease	-
LL14B4_RS11815 (LL14B4_11805)	-	2371574..2372311 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
LL14B4_RS11820 (LL14B4_11810)	-	2372488..2373330 (-)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
LL14B4_RS11825 (LL14B4_11815)	-	2373327..2373764 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
LL14B4_RS11830 (LL14B4_11820)	comGG	2373845..2374129 (-)	285	WP_017865155.1	competence type IV pilus minor pilin ComGG	Machinery gene
LL14B4_RS11835 (LL14B4_11825)	comGF	2374168..2374614 (-)	447	WP_058203710.1	competence type IV pilus minor pilin ComGF	Machinery gene
LL14B4_RS11840 (LL14B4_11830)	comGE	2374577..2374873 (-)	297	WP_033900709.1	competence type IV pilus minor pilin ComGE	Machinery gene
LL14B4_RS11845 (LL14B4_11835)	comGD	2374845..2375243 (-)	399	WP_233610962.1	competence type IV pilus minor pilin ComGD	Machinery gene
LL14B4_RS11850 (LL14B4_11840)	comGC	2375236..2375619 (-)	384	WP_080735951.1	competence type IV pilus major pilin ComGC	Machinery gene
LL14B4_RS11855 (LL14B4_11845)	comGB	2375633..2376706 (-)	1074	WP_080735950.1	competence type IV pilus assembly protein ComGB	Machinery gene
LL14B4_RS11860 (LL14B4_11850)	comGA	2376600..2377538 (-)	939	WP_033900707.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 127 a.a.
• Molecular weight: 14839.44 Da
• Isoelectric Point: 8.4563

>NTDB_id=281831 LL14B4_RS11850 WP_080735951.1 2375236..2375619(-) (comGC) [Lactococcus lactis subsp. lactis strain 14B4]
MERTKKFILKKIQKIFLFVKICEKKCRQKELRAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQA
QLYELDHDDEKPTLSELLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

• Length: 384 bp

>NTDB_id=281831 LL14B4_RS11850 WP_080735951.1 2375236..2375619(-) (comGC) [Lactococcus lactis subsp. lactis strain 14B4]
ATGGAAAGAACTAAGAAGTTTATTTTAAAGAAAATACAAAAAATATTTTTATTCGTTAAAATTTGTGAAAAAAAATGCCG
TCAGAAAGAGCTAAGAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTG
TTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTGAAAGTAGTAGAAAGTCAAGCC
CAACTTTATGAATTAGATCATGATGATGAGAAGCCGACTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACA
AATTTCTGCTTACGATAATTACTATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (32-52)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	80.172	91.339	0.732
comYC	Streptococcus mutans UA159	57.426	79.528	0.457
comYC	Streptococcus mutans UA140	57.426	79.528	0.457
comYC	Streptococcus gordonii str. Challis substr. CH1	56.566	77.953	0.441
comGC/cglC	Streptococcus mitis SK321	54.455	79.528	0.433
comGC/cglC	Streptococcus pneumoniae TIGR4	52.475	79.528	0.417
comGC/cglC	Streptococcus pneumoniae Rx1	52.475	79.528	0.417
comGC/cglC	Streptococcus pneumoniae D39	52.475	79.528	0.417
comGC/cglC	Streptococcus pneumoniae R6	52.475	79.528	0.417
comGC/cglC	Streptococcus mitis NCTC 12261	56.18	70.079	0.394
comYC	Streptococcus suis isolate S10	56.818	69.291	0.394