Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | C3L41_RS00725 | Genome accession | NZ_CP026502 |
| Coordinates | 147711..148016 (+) | Length | 101 a.a. |
| NCBI ID | WP_016171026.1 | Uniprot ID | - |
| Organism | Lactococcus garvieae strain JJJN1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 142711..153016
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3L41_RS00705 | guaB | 143824..145305 (+) | 1482 | WP_003133714.1 | IMP dehydrogenase | - |
| C3L41_RS00710 | rpsU | 145428..145604 (+) | 177 | WP_003134539.1 | 30S ribosomal protein S21 | - |
| C3L41_RS00715 | comGA | 145791..146734 (+) | 944 | Protein_133 | competence type IV pilus ATPase ComGA | - |
| C3L41_RS00720 | comGB | 146673..147692 (+) | 1020 | WP_016171027.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| C3L41_RS00725 | comYC | 147711..148016 (+) | 306 | WP_016171026.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| C3L41_RS00730 | comGD | 147991..148407 (+) | 417 | WP_014024177.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| C3L41_RS00735 | comGE | 148439..148672 (+) | 234 | WP_231844109.1 | competence type IV pilus minor pilin ComGE | - |
| C3L41_RS00740 | comYF | 148653..149093 (+) | 441 | WP_014024179.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| C3L41_RS00745 | - | 149326..150171 (+) | 846 | WP_014024181.1 | zinc ABC transporter substrate-binding protein | - |
| C3L41_RS00750 | - | 150257..151126 (-) | 870 | WP_014570921.1 | RluA family pseudouridine synthase | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11397.28 Da Isoelectric Point: 9.9218
>NTDB_id=269925 C3L41_RS00725 WP_016171026.1 147711..148016(+) (comYC) [Lactococcus garvieae strain JJJN1]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLSKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPSLGKLVSGGLITQK
QADSYNDYYTKNPNEKRNVPN
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLSKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPSLGKLVSGGLITQK
QADSYNDYYTKNPNEKRNVPN
Nucleotide
Download Length: 306 bp
>NTDB_id=269925 C3L41_RS00725 WP_016171026.1 147711..148016(+) (comYC) [Lactococcus garvieae strain JJJN1]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTCTTACTTTTATT
GTTTGTCCCAAATTTGTCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAAGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAGCTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAA
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCAAATGAAAAACGTAATGTACCGAATTAA
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTCTTACTTTTATT
GTTTGTCCCAAATTTGTCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAAGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAGCTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAA
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCAAATGAAAAACGTAATGTACCGAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
62.745 |
100 |
0.634 |
| comYC | Streptococcus mutans UA140 |
67.368 |
94.059 |
0.634 |
| comYC | Streptococcus mutans UA159 |
67.368 |
94.059 |
0.634 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
62 |
99.01 |
0.614 |
| comGC/cglC | Streptococcus mitis SK321 |
61.616 |
98.02 |
0.604 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
57.576 |
98.02 |
0.564 |
| comGC/cglC | Streptococcus pneumoniae D39 |
57.576 |
98.02 |
0.564 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
57.576 |
98.02 |
0.564 |
| comGC/cglC | Streptococcus pneumoniae R6 |
57.576 |
98.02 |
0.564 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
61.538 |
90.099 |
0.554 |
| comYC | Streptococcus suis isolate S10 |
58.025 |
80.198 |
0.465 |
| comGC | Staphylococcus aureus MW2 |
49.367 |
78.218 |
0.386 |
| comGC | Staphylococcus aureus N315 |
49.367 |
78.218 |
0.386 |