Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   C3L41_RS00720 Genome accession   NZ_CP026502
Coordinates   146673..147692 (+) Length   339 a.a.
NCBI ID   WP_016171027.1    Uniprot ID   -
Organism   Lactococcus garvieae strain JJJN1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 141673..152692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3L41_RS00700 - 142201..143655 (-) 1455 WP_014570920.1 GH25 family lysozyme -
  C3L41_RS00705 guaB 143824..145305 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  C3L41_RS00710 rpsU 145428..145604 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  C3L41_RS00715 comGA 145791..146734 (+) 944 Protein_133 competence type IV pilus ATPase ComGA -
  C3L41_RS00720 comGB 146673..147692 (+) 1020 WP_016171027.1 competence type IV pilus assembly protein ComGB Machinery gene
  C3L41_RS00725 comYC 147711..148016 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  C3L41_RS00730 comGD 147991..148407 (+) 417 WP_014024177.1 competence type IV pilus minor pilin ComGD Machinery gene
  C3L41_RS00735 comGE 148439..148672 (+) 234 WP_231844109.1 competence type IV pilus minor pilin ComGE -
  C3L41_RS00740 comYF 148653..149093 (+) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  C3L41_RS00745 - 149326..150171 (+) 846 WP_014024181.1 zinc ABC transporter substrate-binding protein -
  C3L41_RS00750 - 150257..151126 (-) 870 WP_014570921.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 39294.00 Da        Isoelectric Point: 9.8252

>NTDB_id=269924 C3L41_RS00720 WP_016171027.1 146673..147692(+) (comGB) [Lactococcus garvieae strain JJJN1]
MDLSQLLQLRTKKLSLAKQIKLVQLMNNLFKSGFHLSEIIDFLERSGLTEAYFISKMRAGLLNGQSFSGILAKLKFNEDI
VTQLSLAESHGNVEYTLGLIEEKLRRVLNIRKKLIQVATYPLVLLAFLIFIMLGLKNYLLPQLDENRGLATYVIQNLPSL
FLGCLFSLLVVFYLGRYYWKKKTALEAMRLMVKIPFVGRFVQLYLTAYFSREWGNLIAQAVDLRQICFIMQEQKSRIFKE
FGFELLHILDRGQKFEDALRLYPIFTKELALIVEYGELKSKLGKELMVFSEESWALFFERVERAMQLIQPIVFLLVALLI
ILIYAAMLLPIYSNMGNLI

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=269924 C3L41_RS00720 WP_016171027.1 146673..147692(+) (comGB) [Lactococcus garvieae strain JJJN1]
ATGGATTTATCTCAGCTGTTACAGCTGCGCACGAAAAAATTGAGTTTAGCGAAGCAGATTAAGCTTGTTCAACTTATGAA
TAATCTTTTCAAAAGTGGCTTTCACCTTTCTGAAATTATTGATTTTCTTGAACGGTCGGGTCTCACGGAAGCATACTTTA
TTTCCAAAATGCGTGCAGGTTTACTCAACGGGCAAAGTTTCTCTGGTATTTTAGCGAAGCTCAAATTTAATGAGGATATT
GTGACTCAGCTCTCTTTGGCCGAGTCTCATGGGAATGTTGAGTATACTTTAGGGTTGATTGAAGAAAAACTGAGACGCGT
TTTGAACATTCGCAAAAAGCTCATCCAAGTTGCCACTTACCCGCTCGTTCTTCTGGCATTTCTAATCTTTATCATGCTAG
GGTTGAAAAATTATTTACTGCCTCAACTGGACGAAAACAGAGGATTAGCAACTTATGTTATACAGAATCTTCCGTCCCTC
TTTTTAGGGTGCCTCTTCAGTTTGCTTGTTGTCTTTTATCTGGGCAGATACTATTGGAAGAAAAAAACTGCTTTAGAAGC
GATGAGGCTAATGGTCAAAATACCTTTTGTTGGCCGTTTTGTCCAGCTTTATTTGACAGCTTATTTTTCAAGAGAATGGG
GAAACTTAATTGCTCAAGCAGTCGATTTACGTCAGATTTGTTTTATTATGCAAGAACAAAAAAGTCGAATCTTCAAAGAA
TTTGGTTTTGAGCTCCTTCATATATTAGATAGGGGTCAGAAGTTTGAAGATGCCCTTCGACTTTACCCCATATTTACCAA
GGAGTTGGCATTAATTGTGGAATATGGTGAACTAAAGTCCAAGCTAGGGAAAGAGTTAATGGTTTTTTCTGAAGAAAGCT
GGGCGCTCTTTTTTGAAAGAGTTGAAAGAGCAATGCAACTTATCCAGCCTATCGTTTTCTTGCTCGTGGCGCTGTTGATT
ATTTTAATTTATGCTGCAATGTTACTTCCTATATATAGCAATATGGGAAACTTGATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(23-141)

Type II secretion system (T2SS), protein F (T2SSF)

(209-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Lactococcus lactis subsp. cremoris KW2

53.846

99.705

0.537
  comGB/cglB Streptococcus mitis NCTC 12261

53.433

98.82

0.528
  comGB/cglB Streptococcus pneumoniae D39

52.239

98.82

0.516
  comGB/cglB Streptococcus pneumoniae R6

52.239

98.82

0.516
  comGB/cglB Streptococcus pneumoniae TIGR4

52.239

98.82

0.516
  comGB/cglB Streptococcus mitis SK321

52.239

98.82

0.516
  comGB/cglB Streptococcus pneumoniae Rx1

52.239

98.82

0.516
  comYB Streptococcus gordonii str. Challis substr. CH1

51.488

99.115

0.51
  comYB Streptococcus mutans UA140

51.429

92.92

0.478
  comYB Streptococcus mutans UA159

51.111

92.92

0.475

Multiple sequence alignment