Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   C3L41_RS00740 Genome accession   NZ_CP026502
Coordinates   148653..149093 (+) Length   146 a.a.
NCBI ID   WP_014024179.1    Uniprot ID   -
Organism   Lactococcus garvieae strain JJJN1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143653..154093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3L41_RS00705 guaB 143824..145305 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  C3L41_RS00710 rpsU 145428..145604 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  C3L41_RS00715 comGA 145791..146734 (+) 944 Protein_133 competence type IV pilus ATPase ComGA -
  C3L41_RS00720 comGB 146673..147692 (+) 1020 WP_016171027.1 competence type IV pilus assembly protein ComGB Machinery gene
  C3L41_RS00725 comYC 147711..148016 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  C3L41_RS00730 comGD 147991..148407 (+) 417 WP_014024177.1 competence type IV pilus minor pilin ComGD Machinery gene
  C3L41_RS00735 comGE 148439..148672 (+) 234 WP_231844109.1 competence type IV pilus minor pilin ComGE -
  C3L41_RS00740 comYF 148653..149093 (+) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  C3L41_RS00745 - 149326..150171 (+) 846 WP_014024181.1 zinc ABC transporter substrate-binding protein -
  C3L41_RS00750 - 150257..151126 (-) 870 WP_014570921.1 RluA family pseudouridine synthase -
  C3L41_RS00755 - 151202..153490 (+) 2289 WP_014024183.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16835.45 Da        Isoelectric Point: 9.6906

>NTDB_id=269927 C3L41_RS00740 WP_014024179.1 148653..149093(+) (comYF) [Lactococcus garvieae strain JJJN1]
MFLKKNKVTAFTLLESLLALLVLVGTFSLFLGMTKMFHEEVKRATTDHTQDWQLFCSLLRSELEGASLDKVENNYLYVRK
HVNLRFGLSSQGDFRKTNANGRGYQPMIHHLKNAKISQEGEQIKIILTFEKGGDRTFLYTFPEKES

Nucleotide


Download         Length: 441 bp        

>NTDB_id=269927 C3L41_RS00740 WP_014024179.1 148653..149093(+) (comYF) [Lactococcus garvieae strain JJJN1]
TTGTTCTTGAAAAAAAATAAAGTTACAGCCTTTACACTTTTGGAATCACTCCTTGCTTTACTCGTGTTAGTGGGCACTTT
TTCTCTTTTTCTAGGTATGACTAAAATGTTTCATGAGGAAGTGAAACGTGCTACAACAGACCATACCCAAGACTGGCAAC
TTTTTTGTAGTCTACTGAGAAGTGAACTTGAGGGAGCAAGTTTAGATAAGGTAGAAAATAACTATCTTTATGTACGCAAA
CATGTTAACCTAAGGTTTGGCCTTTCCTCTCAAGGGGATTTTCGAAAAACTAACGCGAATGGACGAGGCTATCAGCCCAT
GATTCATCATTTAAAAAATGCAAAAATCAGCCAAGAGGGAGAGCAGATAAAAATTATCTTGACTTTTGAAAAAGGAGGAG
ACCGCACATTTCTTTACACGTTCCCAGAGAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(40-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

50.355

96.575

0.486
  comYF Streptococcus mutans UA159

49.645

96.575

0.479
  comGF Lactococcus lactis subsp. cremoris KW2

49.64

95.205

0.473
  comGF/cglF Streptococcus pneumoniae TIGR4

40.972

98.63

0.404
  comGF/cglF Streptococcus pneumoniae D39

40.972

98.63

0.404
  comGF/cglF Streptococcus pneumoniae Rx1

40.972

98.63

0.404
  comGF/cglF Streptococcus pneumoniae R6

40.972

98.63

0.404
  comGF/cglF Streptococcus mitis NCTC 12261

38.889

98.63

0.384
  comGF/cglF Streptococcus mitis SK321

38.194

98.63

0.377

Multiple sequence alignment