Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SAOUHSC_00765 Genome accession   NC_007795
Coordinates   747288..748226 (+) Length   312 a.a.
NCBI ID   YP_499323.1    Uniprot ID   Q2G057
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 742288..753226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_00760 - 742999..744069 (-) 1071 YP_499319.1 hypothetical protein -
  SAOUHSC_00762 - 744387..745442 (+) 1056 YP_499320.1 hypothetical protein -
  SAOUHSC_00763 - 745612..746253 (-) 642 YP_499321.1 hypothetical protein -
  SAOUHSC_00764 - 746397..746780 (+) 384 YP_499322.1 hypothetical protein -
  SAOUHSC_00765 comFA 747288..748226 (+) 939 YP_499323.1 hypothetical protein Machinery gene
  SAOUHSC_00766 - 748219..748893 (+) 675 YP_499324.1 hypothetical protein -
  SAOUHSC_00767 - 748954..749526 (+) 573 YP_499325.1 hypothetical protein -
  SAOUHSC_00769 secA 749940..752471 (+) 2532 YP_499326.1 preprotein translocase subunit SecA -
  SAOUHSC_00770 - 752513..752617 (+) 105 YP_499327.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 36479.45 Da        Isoelectric Point: 9.8814

>NTDB_id=25436 SAOUHSC_00765 YP_499323.1 747288..748226(+) (comFA) [Staphylococcus aureus subsp. aureus NCTC 8325]
MLYAVTGAGKTEMMFQGIQYARIQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRF
KQHFDTIFIDEVDAFPLSMDKNLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLN
NKKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERG
FTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 939 bp        

>NTDB_id=25436 SAOUHSC_00765 YP_499323.1 747288..748226(+) (comFA) [Staphylococcus aureus subsp. aureus NCTC 8325]
TTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAA
TATAGCTATTGTGTCACCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATA
TAGACATACTACACCAGCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTC
AAACAGCACTTTGATACTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATT
GAAGTCATCTTCTAAAGTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCC
ACGAAAATATAATTAAATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAAT
AATAAGAAGATTCAGAAAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAA
CAATATAGAAACAATGATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATG
TTTTTCGCTTTGAAAAAGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGA
TTTACAATGGCAAATTTGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACG
TGTTGGACGAAAATTAGAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTA
AAAAAGAGATTCAAAGGATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(166-270)

Type III restriction enzyme, res subunit (ResIII)

(4-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2G057

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.241

100

0.397
  comFA/cflA Streptococcus pneumoniae Rx1

38.365

100

0.391
  comFA/cflA Streptococcus pneumoniae D39

38.365

100

0.391
  comFA/cflA Streptococcus pneumoniae R6

38.365

100

0.391
  comFA/cflA Streptococcus pneumoniae TIGR4

38.365

100

0.391
  comFA/cflA Streptococcus mitis SK321

38.095

100

0.385
  comFA/cflA Streptococcus mitis NCTC 12261

37.778

100

0.381
  comFA Lactococcus lactis subsp. cremoris KW2

37.419

99.359

0.372

Multiple sequence alignment