Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PFL01_RS00105 Genome accession   NC_007492
Coordinates   21282..22382 (+) Length   366 a.a.
NCBI ID   WP_011331747.1    Uniprot ID   -
Organism   Pseudomonas fluorescens Pf0-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 16282..27382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL01_RS00085 (Pfl01_0015) rsmB 17178..18488 (-) 1311 WP_011331744.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PFL01_RS00090 (Pfl01_0016) fmt 18485..19444 (-) 960 WP_011331745.1 methionyl-tRNA formyltransferase -
  PFL01_RS00095 (Pfl01_0017) def 19501..20007 (-) 507 WP_007954104.1 peptide deformylase -
  PFL01_RS00100 (Pfl01_0018) tsaP 20177..21202 (+) 1026 WP_011331746.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PFL01_RS00105 (Pfl01_0019) dprA 21282..22382 (+) 1101 WP_011331747.1 DNA-processing protein DprA Machinery gene
  PFL01_RS00110 (Pfl01_0020) - 22437..22994 (+) 558 WP_011331748.1 L-threonylcarbamoyladenylate synthase -
  PFL01_RS00115 (Pfl01_0021) - 23036..24013 (-) 978 WP_011331749.1 NADPH:quinone reductase -
  PFL01_RS00120 (Pfl01_0022) hemF 24161..25075 (+) 915 WP_011331750.1 oxygen-dependent coproporphyrinogen oxidase -
  PFL01_RS00125 (Pfl01_0023) aroE 25085..25906 (+) 822 WP_011331751.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38773.48 Da        Isoelectric Point: 7.5638

>NTDB_id=24955 PFL01_RS00105 WP_011331747.1 21282..22382(+) (dprA) [Pseudomonas fluorescens Pf0-1]
MMMPVSASVSPAELEARLRLHRLPEVGPKRFAKLLEAFGSASKAISAPASAWRSLGLPAACAEARRCPEVRDGASHALRW
LERPDQHLLMWDHPDYPALLAQIPDPPPLLFVAGDPRILEKPQLAVIGSRRASRPGMDTAAAFSRSLAGAGFVITSGLAL
GIDAAAHQAAVDVGGQTVGVLGTGLENFYPQRNRRLADVMIASGSAVVSEFPLDTGPTASNFPRRNRIISGLSLGVLVVE
ASVASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAVLVETIEHILEALRGWQHLPVSTAAANPDNPLLRLL
HAAPHTSEGLADSSGWALPKVLAALTELEMDGRAVCENGRWFARVS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=24955 PFL01_RS00105 WP_011331747.1 21282..22382(+) (dprA) [Pseudomonas fluorescens Pf0-1]
ATGATGATGCCTGTCTCTGCGTCGGTTTCCCCGGCGGAACTGGAAGCGCGCCTGCGCCTGCACCGCTTGCCGGAAGTCGG
TCCCAAACGTTTTGCCAAGCTGCTCGAAGCCTTCGGCTCTGCCTCCAAGGCAATCAGCGCGCCGGCCAGCGCCTGGCGCT
CGCTGGGTTTGCCGGCGGCTTGTGCCGAGGCCCGGCGCTGTCCTGAAGTTCGCGACGGCGCCAGCCACGCATTGCGCTGG
CTAGAGCGTCCGGATCAACATTTGCTGATGTGGGATCACCCGGATTATCCGGCCCTGCTGGCGCAGATTCCCGATCCACC
GCCCCTGCTGTTTGTCGCTGGCGACCCACGGATTCTGGAAAAACCGCAACTGGCGGTGATCGGCAGTCGCCGCGCTTCCC
GCCCGGGCATGGACACTGCCGCTGCGTTTTCCCGCAGTCTGGCCGGGGCCGGATTTGTCATCACCAGTGGGCTGGCGCTG
GGCATCGATGCGGCGGCGCATCAAGCTGCTGTCGACGTCGGCGGGCAAACGGTCGGCGTGCTCGGTACCGGTCTGGAAAA
CTTTTATCCACAGCGCAATCGGCGGTTGGCGGACGTGATGATTGCGTCCGGCAGTGCGGTGGTTTCGGAATTTCCTCTGG
ACACCGGGCCGACGGCCAGCAACTTCCCAAGACGCAATCGGATCATCAGCGGTTTGTCCCTCGGCGTGCTGGTGGTCGAG
GCCAGCGTGGCCAGCGGTTCGTTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTC
GATCCACCACCCCGGCGCCCGGGGCTGTCATCAACTGATCCGTGACGGCGCCGTGCTGGTGGAAACCATCGAGCACATTC
TCGAAGCCCTGCGCGGCTGGCAACATCTGCCGGTATCCACAGCCGCAGCGAATCCGGACAACCCGTTGTTGCGTCTATTG
CACGCCGCGCCGCACACCAGCGAAGGGCTGGCCGACAGCAGTGGCTGGGCGTTACCCAAAGTCCTGGCGGCATTGACCGA
ACTGGAGATGGATGGCCGCGCGGTGTGCGAAAACGGCCGCTGGTTTGCGCGCGTGAGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-288)

DprA winged helix domain (WHD_DprA)

(309-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

41.598

99.18

0.413
  dprA Legionella pneumophila strain ERS1305867

41.011

97.268

0.399
  dprA Acinetobacter baylyi ADP1

40.845

96.995

0.396
  dprA Neisseria gonorrhoeae strain FA1090

45.455

84.153

0.383
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.326

97.268

0.383
  dprA Neisseria meningitidis MC58

45.307

84.426

0.383
  dprA Neisseria meningitidis strain C311

45.307

84.426

0.383
  dprA Neisseria gonorrhoeae MS11

45.13

84.153

0.38
  dprA Glaesserella parasuis strain SC1401

42.633

87.158

0.372
  dprA Acinetobacter baumannii D1279779

38.636

96.175

0.372
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.595

80.874

0.361
  dprA Vibrio cholerae strain A1552

44.595

80.874

0.361
  dprA Haemophilus influenzae Rd KW20

46.316

77.869

0.361

Multiple sequence alignment