Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PFL01_RS00100 Genome accession   NC_007492
Coordinates   20177..21202 (+) Length   341 a.a.
NCBI ID   WP_011331746.1    Uniprot ID   -
Organism   Pseudomonas fluorescens Pf0-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 15177..26202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL01_RS00075 (Pfl01_0013) - 15444..15758 (-) 315 WP_011331742.1 tetratricopeptide repeat protein -
  PFL01_RS00080 (Pfl01_0014) trkA 15779..17155 (-) 1377 WP_011331743.1 Trk system potassium transporter TrkA -
  PFL01_RS00085 (Pfl01_0015) rsmB 17178..18488 (-) 1311 WP_011331744.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PFL01_RS00090 (Pfl01_0016) fmt 18485..19444 (-) 960 WP_011331745.1 methionyl-tRNA formyltransferase -
  PFL01_RS00095 (Pfl01_0017) def 19501..20007 (-) 507 WP_007954104.1 peptide deformylase -
  PFL01_RS00100 (Pfl01_0018) tsaP 20177..21202 (+) 1026 WP_011331746.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PFL01_RS00105 (Pfl01_0019) dprA 21282..22382 (+) 1101 WP_011331747.1 DNA-processing protein DprA Machinery gene
  PFL01_RS00110 (Pfl01_0020) - 22437..22994 (+) 558 WP_011331748.1 L-threonylcarbamoyladenylate synthase -
  PFL01_RS00115 (Pfl01_0021) - 23036..24013 (-) 978 WP_011331749.1 NADPH:quinone reductase -
  PFL01_RS00120 (Pfl01_0022) hemF 24161..25075 (+) 915 WP_011331750.1 oxygen-dependent coproporphyrinogen oxidase -
  PFL01_RS00125 (Pfl01_0023) aroE 25085..25906 (+) 822 WP_011331751.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37461.75 Da        Isoelectric Point: 9.0614

>NTDB_id=24954 PFL01_RS00100 WP_011331746.1 20177..21202(+) (tsaP) [Pseudomonas fluorescens Pf0-1]
MRKSLLALLFLASAGAAHGQVQLKEGFPQQYTVVSGDTLWDISGKYLREPWQWPQLWRANPQIENPNLIYPGDTLTLSYV
NGQPRLTVNRGESRGTIKLSPRIRTSPVAEAIPSIPLKSINSFLLSNRIVDKVEDFDKAPYIVAGDAERVLSGTGDRIFA
RGHFDPNQPVYGIFRQGKVYTDPQTKEFLGINADDIGGGEIVATEGDVATLALQRTTQEVRLGDRLFSGEERSINSTFMP
SAPTTDINGLIIDVPRGVTQIGAMDVVTLNKGKRDGLAEGNVLVVMKTGETVRDRITGQPLKIPDERAGLLMVFRTYDKL
SYGLVLNASRSLAVLDKVRNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=24954 PFL01_RS00100 WP_011331746.1 20177..21202(+) (tsaP) [Pseudomonas fluorescens Pf0-1]
ATGAGGAAATCACTACTCGCCCTGCTGTTTCTGGCCTCGGCCGGCGCCGCGCACGGGCAAGTGCAACTCAAGGAAGGTTT
TCCACAGCAATACACGGTGGTTTCGGGGGATACGCTCTGGGACATCTCCGGAAAATATTTGCGCGAACCCTGGCAGTGGC
CACAGCTGTGGCGGGCCAATCCGCAGATCGAAAACCCCAACCTGATCTACCCCGGCGACACACTGACGCTCAGTTACGTC
AACGGTCAGCCGCGCCTGACCGTCAATCGCGGCGAGTCGCGCGGCACCATCAAGTTGTCGCCGCGCATCCGTACCAGCCC
GGTGGCCGAGGCGATTCCGAGCATTCCGCTCAAATCGATCAACAGCTTTCTGCTGAGCAACCGCATCGTCGACAAGGTCG
AGGACTTCGACAAGGCGCCGTACATCGTCGCCGGCGATGCCGAGCGGGTGCTCAGCGGCACCGGCGACCGGATCTTCGCC
CGTGGCCATTTCGACCCGAACCAGCCGGTCTACGGCATCTTCCGCCAGGGCAAGGTCTACACCGATCCGCAGACCAAGGA
GTTTCTGGGGATCAACGCCGACGACATCGGCGGCGGCGAAATCGTCGCCACTGAAGGGGACGTCGCCACCCTCGCCCTGC
AACGCACGACCCAGGAAGTGCGCCTCGGCGACCGCTTGTTCAGTGGCGAAGAGCGTTCGATCAACTCGACCTTCATGCCC
AGCGCTCCCACCACTGACATCAACGGCCTGATCATCGATGTGCCGCGCGGCGTCACACAAATCGGCGCGATGGACGTGGT
GACCCTGAACAAGGGCAAACGCGACGGCCTGGCCGAGGGCAACGTGCTGGTGGTGATGAAAACCGGGGAAACCGTGCGTG
ACCGGATCACCGGCCAACCCCTGAAAATCCCCGATGAGCGCGCCGGCTTGCTGATGGTGTTCCGCACCTACGACAAACTC
AGTTACGGCCTCGTGCTGAACGCATCGCGCTCGCTCGCGGTGCTGGACAAGGTGCGAAATCCTTAG

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

33.88

100

0.364

Multiple sequence alignment