Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CK207_RS13585 Genome accession   NZ_CP023054
Coordinates   2901062..2902777 (-) Length   571 a.a.
NCBI ID   WP_019282437.1    Uniprot ID   A0A241PTH2
Organism   Vibrio anguillarum strain VIB43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2896062..2907777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK207_RS13565 (CK207_13565) - 2896794..2897624 (-) 831 WP_019282435.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  CK207_RS13570 (CK207_13570) - 2897694..2899193 (-) 1500 WP_069211900.1 AAA family ATPase -
  CK207_RS13575 (CK207_13575) aroB 2899242..2900330 (-) 1089 WP_029388273.1 3-dehydroquinate synthase -
  CK207_RS13580 (CK207_13580) aroK 2900354..2900875 (-) 522 WP_010317691.1 shikimate kinase AroK -
  CK207_RS13585 (CK207_13585) pilQ 2901062..2902777 (-) 1716 WP_019282437.1 type IV pilus secretin PilQ family protein Machinery gene
  CK207_RS13590 (CK207_13590) pilP 2902801..2903322 (-) 522 WP_013855888.1 pilus assembly protein PilP Machinery gene
  CK207_RS13595 (CK207_13595) pilO 2903309..2903902 (-) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  CK207_RS13600 (CK207_13600) pilN 2903895..2904497 (-) 603 WP_017047271.1 PilN domain-containing protein Machinery gene
  CK207_RS13605 (CK207_13605) pilM 2904487..2905497 (-) 1011 WP_019282438.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 62274.76 Da        Isoelectric Point: 4.8701

>NTDB_id=244617 CK207_RS13585 WP_019282437.1 2901062..2902777(-) (pilQ) [Vibrio anguillarum strain VIB43]
MIKGLQTQMTMVFRSLLFGLLLSVAGLSVAAETAQTNELKGIDFRVNKNKDAVLIVELASPSTVVNVQKVADGLQIELLK
TDVSNEKLYVLDVKDFATVVESIEVLRKEPSTQLLATIHGEFKYDYSLKGKYLEVVIGKLKEQEKPKPKSILEKEGKLIS
INFQDIPVRNVLQLIADYNAFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDLREKQQL
EKARLAEELGDLRSEIIKINFAKASDIAQMIGGEGAVSMLSERGSISIDERTNSLLIRELAENIVVIRQIVESLDIPVKQ
VQIEARIVTVNEGNLDELGVRWGFTSTNGNNTAGGSIESNLFQVGKLGESTLPVDDFLNVNLAATSANASSIAFQVAKLG
SDMLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVAFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRPGDIVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVNNTVDKVPLLGDLPLLGALFRRSYEQVGKSEL
LIFVTPKVVIQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=244617 CK207_RS13585 WP_019282437.1 2901062..2902777(-) (pilQ) [Vibrio anguillarum strain VIB43]
ATGATTAAAGGACTACAGACACAAATGACTATGGTATTTCGGAGCCTCTTATTTGGCTTATTATTGAGTGTGGCAGGGCT
AAGTGTGGCGGCAGAAACGGCGCAGACCAACGAGCTTAAAGGCATTGATTTTCGAGTCAATAAAAACAAAGACGCTGTAT
TGATTGTTGAACTCGCATCACCTTCGACAGTAGTTAATGTGCAGAAAGTGGCTGACGGTTTACAAATTGAACTGCTTAAG
ACGGATGTCTCCAATGAGAAACTCTATGTCTTAGACGTCAAAGATTTTGCAACCGTTGTTGAGAGTATCGAGGTATTGCG
CAAAGAGCCAAGTACACAGTTACTGGCGACCATTCATGGCGAGTTTAAGTATGATTACAGCTTGAAAGGGAAATACCTTG
AGGTGGTGATTGGCAAACTGAAAGAACAAGAAAAACCTAAGCCGAAGAGCATTCTTGAGAAAGAGGGCAAGCTTATCTCG
ATTAACTTTCAAGATATTCCTGTGCGAAATGTTTTGCAGCTTATCGCAGATTATAACGCGTTTAACCTAGTCGTCTCAGA
TTCGGTCACTGGTAACCTGACGCTACGGCTTGATGGCGTGCCTTGGCAGCAAGTGCTCGATATCATTTTGCAAGTCAAGG
GATTAGATAAGCGTGTTGACGGCAATGTGATTTTAGTTGCACCTAAAGAAGAGTTGGATTTACGTGAAAAGCAGCAGCTT
GAAAAGGCACGTTTGGCTGAAGAGTTGGGCGATCTGCGTTCTGAAATCATCAAAATTAATTTTGCTAAGGCGTCTGATAT
TGCGCAGATGATTGGCGGTGAAGGGGCGGTCAGCATGTTGTCTGAGCGAGGTTCCATCAGTATCGACGAGCGAACCAACT
CACTGCTGATCCGCGAATTGGCTGAGAATATTGTGGTGATACGCCAAATTGTTGAATCGCTCGATATCCCGGTCAAACAG
GTACAGATTGAAGCGCGCATTGTTACGGTCAACGAAGGTAATTTGGATGAACTTGGCGTACGCTGGGGCTTTACTTCGAC
CAATGGCAACAACACCGCAGGCGGAAGTATTGAAAGTAATTTATTCCAAGTGGGCAAGTTGGGGGAAAGCACATTGCCCG
TTGATGACTTCCTTAACGTAAACTTAGCGGCGACCTCCGCTAACGCCTCAAGTATTGCCTTCCAAGTGGCTAAGTTGGGG
TCGGATATGTTGTTGGATTTAGAGCTTTCAGCGCTACAACGTGAGTCGAAAGCGGAGATCATTTCCAGCCCTCGTTTGAT
CACGACCAACAAGAAACCCGCTTATATCGAGCAGGGTACGGAGATCCCTTATTTGGAGTCTTCTTCCAGCGGGGCAACGA
CAGTCGCCTTCAAAAAAGCAGTGCTGAGTTTAAAAGTGACGCCACAGATAACGCCGGATAATCGTTTAGTGTTAGATCTC
AGTGTCACTCAAGACCGGCCTGGGGATATTGTAAAAACAGGGACGGGAGAAGCGGTTGCAATTAATACTCAGCGTATTGG
CACTCAAGTATTGGTCAATAATGGAGAAACCGTGGTCCTTGGTGGAATATTCCAACATAGCGTCAACAATACGGTAGATA
AGGTGCCATTACTTGGTGATTTGCCATTACTTGGTGCATTGTTCCGCCGTTCCTATGAGCAAGTGGGCAAAAGTGAGCTG
CTGATTTTCGTGACACCGAAAGTCGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)

Bacterial type II and III secretion system protein (Secretin)

(411-569)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A241PTH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

82.487

100

0.825
  pilQ Vibrio cholerae strain A1552

82.487

100

0.825
  pilQ Vibrio campbellii strain DS40M4

79.129

96.497

0.764
  pilQ Legionella pneumophila strain ERS1305867

42.222

94.571

0.399
  pilQ Legionella pneumophila strain Lp02

42.222

94.571

0.399
  pilQ Pseudomonas aeruginosa PAK

39.855

96.673

0.385
  comQ Acinetobacter baylyi ADP1

39.247

97.723

0.384
  pilQ Acinetobacter baumannii strain A118

36.661

100

0.373
  pilQ Acinetobacter baumannii D1279779

36.661

100

0.373

Multiple sequence alignment