Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CK207_RS13600 Genome accession   NZ_CP023054
Coordinates   2903895..2904497 (-) Length   200 a.a.
NCBI ID   WP_017047271.1    Uniprot ID   A0AAW8GXZ8
Organism   Vibrio anguillarum strain VIB43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2898895..2909497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK207_RS13575 (CK207_13575) aroB 2899242..2900330 (-) 1089 WP_029388273.1 3-dehydroquinate synthase -
  CK207_RS13580 (CK207_13580) aroK 2900354..2900875 (-) 522 WP_010317691.1 shikimate kinase AroK -
  CK207_RS13585 (CK207_13585) pilQ 2901062..2902777 (-) 1716 WP_019282437.1 type IV pilus secretin PilQ family protein Machinery gene
  CK207_RS13590 (CK207_13590) pilP 2902801..2903322 (-) 522 WP_013855888.1 pilus assembly protein PilP Machinery gene
  CK207_RS13595 (CK207_13595) pilO 2903309..2903902 (-) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  CK207_RS13600 (CK207_13600) pilN 2903895..2904497 (-) 603 WP_017047271.1 PilN domain-containing protein Machinery gene
  CK207_RS13605 (CK207_13605) pilM 2904487..2905497 (-) 1011 WP_019282438.1 type IV pilus assembly protein PilM Machinery gene
  CK207_RS13610 (CK207_13610) - 2905647..2908145 (+) 2499 WP_019282439.1 PBP1A family penicillin-binding protein -
  CK207_RS13615 (CK207_13615) oxyR 2908182..2909072 (-) 891 WP_026027425.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22717.24 Da        Isoelectric Point: 9.6928

>NTDB_id=244620 CK207_RS13600 WP_017047271.1 2903895..2904497(-) (pilN) [Vibrio anguillarum strain VIB43]
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQQQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD

Nucleotide


Download         Length: 603 bp        

>NTDB_id=244620 CK207_RS13600 WP_017047271.1 2903895..2904497(-) (pilN) [Vibrio anguillarum strain VIB43]
ATGTTGCATAGTATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCGCAGCAGCAAGAGTCTC
GTCTGGCTTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCGCAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

67.021

94

0.63
  pilN Vibrio campbellii strain DS40M4

66.129

93

0.615

Multiple sequence alignment