Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | CK207_RS13595 | Genome accession | NZ_CP023054 |
| Coordinates | 2903309..2903902 (-) | Length | 197 a.a. |
| NCBI ID | WP_013855887.1 | Uniprot ID | A0A233HKC5 |
| Organism | Vibrio anguillarum strain VIB43 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2898309..2908902
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CK207_RS13575 (CK207_13575) | aroB | 2899242..2900330 (-) | 1089 | WP_029388273.1 | 3-dehydroquinate synthase | - |
| CK207_RS13580 (CK207_13580) | aroK | 2900354..2900875 (-) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| CK207_RS13585 (CK207_13585) | pilQ | 2901062..2902777 (-) | 1716 | WP_019282437.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CK207_RS13590 (CK207_13590) | pilP | 2902801..2903322 (-) | 522 | WP_013855888.1 | pilus assembly protein PilP | Machinery gene |
| CK207_RS13595 (CK207_13595) | pilO | 2903309..2903902 (-) | 594 | WP_013855887.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CK207_RS13600 (CK207_13600) | pilN | 2903895..2904497 (-) | 603 | WP_017047271.1 | PilN domain-containing protein | Machinery gene |
| CK207_RS13605 (CK207_13605) | pilM | 2904487..2905497 (-) | 1011 | WP_019282438.1 | type IV pilus assembly protein PilM | Machinery gene |
| CK207_RS13610 (CK207_13610) | - | 2905647..2908145 (+) | 2499 | WP_019282439.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23039.37 Da Isoelectric Point: 4.3879
>NTDB_id=244619 CK207_RS13595 WP_013855887.1 2903309..2903902(-) (pilO) [Vibrio anguillarum strain VIB43]
MTSFQDLDMDEMAEWPLLPQLLVILVLMLIIQGVGAWFYLMPQNEQLQNLKQQEEVLKSTLRIKASKAATLPQLQAQLDE
LTERYDFLLRQLPVQKELASMLASVNELGLDNALTFTRIDWGEKQNKEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEKQ
MTSFQDLDMDEMAEWPLLPQLLVILVLMLIIQGVGAWFYLMPQNEQLQNLKQQEEVLKSTLRIKASKAATLPQLQAQLDE
LTERYDFLLRQLPVQKELASMLASVNELGLDNALTFTRIDWGEKQNKEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEKQ
Nucleotide
Download Length: 594 bp
>NTDB_id=244619 CK207_RS13595 WP_013855887.1 2903309..2903902(-) (pilO) [Vibrio anguillarum strain VIB43]
ATGACTAGTTTTCAAGATCTTGATATGGATGAAATGGCTGAGTGGCCGTTGCTGCCTCAACTGCTGGTTATTTTGGTGTT
GATGCTGATTATTCAAGGCGTTGGCGCGTGGTTCTATCTTATGCCTCAAAATGAGCAATTGCAGAACTTAAAACAGCAAG
AAGAGGTGCTGAAATCGACCTTACGGATTAAGGCCAGCAAAGCCGCCACCTTACCCCAGTTGCAAGCTCAACTGGATGAA
TTAACTGAACGTTATGATTTTTTATTACGCCAATTACCCGTGCAAAAAGAGCTCGCAAGCATGCTGGCGTCGGTCAATGA
ACTAGGGCTAGATAACGCGTTAACCTTTACACGTATTGATTGGGGAGAAAAACAGAATAAAGAGTTTCTGTATCGTTTGC
CGCTCAATATCGAATTAACTGGTAATTACCACGACATTGGTGATTTCTCAGAGGCGATCGCGAAATTGCCCCGCATTATT
AATTTCGATGATGTTGATTGGCAACGGGTTAGCCAGGAAAGCAGCACGTTGCATTTTAGGGTGCGCGCTTATACCTATCA
ATTCAAGCAAGAGGTGGACGATGAAAAACAATAA
ATGACTAGTTTTCAAGATCTTGATATGGATGAAATGGCTGAGTGGCCGTTGCTGCCTCAACTGCTGGTTATTTTGGTGTT
GATGCTGATTATTCAAGGCGTTGGCGCGTGGTTCTATCTTATGCCTCAAAATGAGCAATTGCAGAACTTAAAACAGCAAG
AAGAGGTGCTGAAATCGACCTTACGGATTAAGGCCAGCAAAGCCGCCACCTTACCCCAGTTGCAAGCTCAACTGGATGAA
TTAACTGAACGTTATGATTTTTTATTACGCCAATTACCCGTGCAAAAAGAGCTCGCAAGCATGCTGGCGTCGGTCAATGA
ACTAGGGCTAGATAACGCGTTAACCTTTACACGTATTGATTGGGGAGAAAAACAGAATAAAGAGTTTCTGTATCGTTTGC
CGCTCAATATCGAATTAACTGGTAATTACCACGACATTGGTGATTTCTCAGAGGCGATCGCGAAATTGCCCCGCATTATT
AATTTCGATGATGTTGATTGGCAACGGGTTAGCCAGGAAAGCAGCACGTTGCATTTTAGGGTGCGCGCTTATACCTATCA
ATTCAAGCAAGAGGTGGACGATGAAAAACAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
80.612 |
99.492 |
0.802 |
| pilO | Vibrio campbellii strain DS40M4 |
70.37 |
95.939 |
0.675 |