Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | CK207_RS13590 | Genome accession | NZ_CP023054 |
| Coordinates | 2902801..2903322 (-) | Length | 173 a.a. |
| NCBI ID | WP_013855888.1 | Uniprot ID | - |
| Organism | Vibrio anguillarum strain VIB43 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2897801..2908322
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CK207_RS13575 (CK207_13575) | aroB | 2899242..2900330 (-) | 1089 | WP_029388273.1 | 3-dehydroquinate synthase | - |
| CK207_RS13580 (CK207_13580) | aroK | 2900354..2900875 (-) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| CK207_RS13585 (CK207_13585) | pilQ | 2901062..2902777 (-) | 1716 | WP_019282437.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CK207_RS13590 (CK207_13590) | pilP | 2902801..2903322 (-) | 522 | WP_013855888.1 | pilus assembly protein PilP | Machinery gene |
| CK207_RS13595 (CK207_13595) | pilO | 2903309..2903902 (-) | 594 | WP_013855887.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CK207_RS13600 (CK207_13600) | pilN | 2903895..2904497 (-) | 603 | WP_017047271.1 | PilN domain-containing protein | Machinery gene |
| CK207_RS13605 (CK207_13605) | pilM | 2904487..2905497 (-) | 1011 | WP_019282438.1 | type IV pilus assembly protein PilM | Machinery gene |
| CK207_RS13610 (CK207_13610) | - | 2905647..2908145 (+) | 2499 | WP_019282439.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19203.29 Da Isoelectric Point: 10.2262
>NTDB_id=244618 CK207_RS13590 WP_013855888.1 2902801..2903322(-) (pilP) [Vibrio anguillarum strain VIB43]
MKNNNLLLMVLFSTSVLVGCKANQDSLKVYVEQVEGQARKEVSKLKPIIQFEVAHYAQHESREPFVLPKEAIVQNQPVVK
ADCWQPPARSKNGQLERYPLNQLRLKGVMSSGGAVSALVQTPQGKVVNVKAGQYLGLNHGKVTRVNSNYLLINETLPDGL
GCWNQRNVKLALK
MKNNNLLLMVLFSTSVLVGCKANQDSLKVYVEQVEGQARKEVSKLKPIIQFEVAHYAQHESREPFVLPKEAIVQNQPVVK
ADCWQPPARSKNGQLERYPLNQLRLKGVMSSGGAVSALVQTPQGKVVNVKAGQYLGLNHGKVTRVNSNYLLINETLPDGL
GCWNQRNVKLALK
Nucleotide
Download Length: 522 bp
>NTDB_id=244618 CK207_RS13590 WP_013855888.1 2902801..2903322(-) (pilP) [Vibrio anguillarum strain VIB43]
ATGAAAAACAATAATCTGCTGCTGATGGTGCTGTTTAGTACCAGTGTATTGGTTGGTTGTAAAGCTAATCAAGATTCATT
GAAGGTTTATGTGGAGCAGGTTGAGGGGCAAGCACGCAAAGAAGTCTCCAAATTAAAACCCATTATTCAATTTGAAGTTG
CTCATTATGCGCAACATGAATCCCGCGAACCTTTTGTGCTGCCTAAAGAAGCGATTGTACAAAATCAGCCTGTAGTGAAG
GCAGACTGCTGGCAACCTCCGGCTCGCAGTAAAAATGGCCAGCTAGAGCGCTATCCGCTTAATCAACTGCGATTAAAAGG
CGTGATGAGTAGCGGGGGCGCGGTATCGGCATTAGTGCAAACGCCCCAAGGCAAGGTCGTCAACGTGAAAGCGGGACAAT
ATTTAGGTTTGAATCACGGCAAAGTTACTCGAGTTAATTCCAATTACCTGCTGATCAATGAAACCTTGCCAGACGGCTTA
GGTTGTTGGAATCAACGTAACGTCAAATTGGCTCTGAAATAG
ATGAAAAACAATAATCTGCTGCTGATGGTGCTGTTTAGTACCAGTGTATTGGTTGGTTGTAAAGCTAATCAAGATTCATT
GAAGGTTTATGTGGAGCAGGTTGAGGGGCAAGCACGCAAAGAAGTCTCCAAATTAAAACCCATTATTCAATTTGAAGTTG
CTCATTATGCGCAACATGAATCCCGCGAACCTTTTGTGCTGCCTAAAGAAGCGATTGTACAAAATCAGCCTGTAGTGAAG
GCAGACTGCTGGCAACCTCCGGCTCGCAGTAAAAATGGCCAGCTAGAGCGCTATCCGCTTAATCAACTGCGATTAAAAGG
CGTGATGAGTAGCGGGGGCGCGGTATCGGCATTAGTGCAAACGCCCCAAGGCAAGGTCGTCAACGTGAAAGCGGGACAAT
ATTTAGGTTTGAATCACGGCAAAGTTACTCGAGTTAATTCCAATTACCTGCTGATCAATGAAACCTTGCCAGACGGCTTA
GGTTGTTGGAATCAACGTAACGTCAAATTGGCTCTGAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
76.301 |
100 |
0.763 |
| pilP | Vibrio campbellii strain DS40M4 |
56.647 |
100 |
0.566 |