Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CHH28_RS09760 Genome accession   NZ_CP022530
Coordinates   2069911..2071137 (-) Length   408 a.a.
NCBI ID   WP_094060136.1    Uniprot ID   A0A222FJK4
Organism   Bacterioplanes sanyensis strain NV9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064911..2076137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHH28_RS09730 (CHH28_09735) - 2064956..2065651 (+) 696 WP_094060130.1 transglutaminase-like cysteine peptidase -
  CHH28_RS09735 (CHH28_09740) - 2065676..2067628 (+) 1953 WP_094060131.1 EAL domain-containing protein -
  CHH28_RS09740 (CHH28_09745) - 2067724..2068134 (+) 411 WP_094060132.1 copper chaperone PCu(A)C -
  CHH28_RS09745 (CHH28_09750) yacG 2068131..2068325 (-) 195 WP_094060133.1 DNA gyrase inhibitor YacG -
  CHH28_RS09750 (CHH28_09755) coaE 2068315..2068926 (-) 612 WP_094060134.1 dephospho-CoA kinase -
  CHH28_RS09755 (CHH28_09760) pilD 2069036..2069854 (-) 819 WP_332881238.1 A24 family peptidase Machinery gene
  CHH28_RS09760 (CHH28_09765) pilC 2069911..2071137 (-) 1227 WP_094060136.1 type II secretion system F family protein Machinery gene
  CHH28_RS09765 (CHH28_09770) pilB 2071202..2072890 (-) 1689 WP_094062036.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CHH28_RS20205 (CHH28_09775) pilA/pilA1 2073135..2073578 (-) 444 WP_094060137.1 pilin Machinery gene
  CHH28_RS09775 (CHH28_09780) nadC 2073867..2074721 (-) 855 WP_094060138.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44475.18 Da        Isoelectric Point: 9.5708

>NTDB_id=240365 CHH28_RS09760 WP_094060136.1 2069911..2071137(-) (pilC) [Bacterioplanes sanyensis strain NV9]
MAKQQQSTPFSWEGVNRRGQKVRGELNSQNPAMVKAQLRKQGVTPTKVKRVTEPLFGLGGKKKKVIKPVDISFFIRQMAT
MVKAGVPLVQAFDIVAEGIDNYTMKELIFAIRDTVAAGNDFASALKEHPQYFDELTCNLIESGEQSGALETMLERVANYK
EKTELLKAKIKKGLTYPIATLVVAIIVTAILLIKVVPTFASMFASFGAALPAPTQLVINLSELVQAYYLHALALLIALGF
GFSEGRKRSQAFRNRVDETILKLPVFGELIKKAAIARYARVLSTTFSAGVPLVDALDSVAGAVGNVVYSRAVLKVKEEVS
TGQQMHFAMRSTGVFPNMVIQMTSIGEESGALDAMLDKAATYYENEVDDAVDNMTALIEPFIMSFLGVVIGGLIIAMYLP
IFMMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=240365 CHH28_RS09760 WP_094060136.1 2069911..2071137(-) (pilC) [Bacterioplanes sanyensis strain NV9]
ATGGCAAAACAGCAACAGTCGACCCCTTTTTCATGGGAAGGTGTTAACCGCCGGGGCCAGAAAGTGCGCGGTGAGCTTAA
CAGTCAAAACCCCGCCATGGTAAAGGCGCAGCTGCGCAAGCAAGGGGTAACGCCCACCAAAGTCAAGCGGGTCACCGAGC
CACTGTTTGGCCTTGGCGGCAAAAAGAAGAAAGTTATCAAACCCGTTGATATTTCGTTTTTCATTCGGCAAATGGCCACC
ATGGTTAAGGCTGGTGTTCCCTTGGTACAGGCGTTTGACATCGTTGCTGAAGGCATTGATAACTACACTATGAAGGAACT
GATCTTTGCCATCCGCGATACTGTGGCAGCCGGTAATGACTTTGCTTCAGCATTGAAGGAGCACCCTCAATACTTTGATG
AATTAACTTGTAACTTAATTGAATCCGGTGAACAATCGGGTGCTCTCGAGACCATGTTGGAGCGGGTTGCTAACTACAAA
GAAAAAACCGAACTATTAAAAGCGAAAATTAAAAAAGGTTTGACCTACCCAATAGCAACGTTGGTAGTTGCTATTATCGT
AACTGCTATTCTTCTAATCAAAGTAGTGCCAACATTTGCTTCAATGTTCGCGAGTTTTGGCGCCGCTTTGCCGGCACCCA
CTCAGCTTGTCATCAACCTATCCGAACTGGTCCAAGCCTACTATTTACATGCTCTAGCGCTATTGATTGCATTAGGATTT
GGTTTTTCAGAAGGACGCAAGCGTTCACAAGCTTTCAGAAACAGAGTTGATGAGACCATCTTGAAGCTGCCAGTATTTGG
CGAACTGATCAAAAAAGCCGCCATTGCCCGCTATGCGCGGGTGTTGTCTACCACCTTTTCTGCTGGCGTACCATTGGTGG
ATGCATTAGATTCGGTAGCTGGTGCAGTGGGGAACGTGGTGTACAGTAGAGCGGTACTGAAGGTAAAAGAGGAGGTGTCG
ACCGGTCAGCAAATGCACTTTGCTATGCGCTCGACGGGTGTTTTCCCCAATATGGTGATTCAAATGACCAGTATTGGCGA
GGAGTCTGGTGCTCTGGATGCCATGCTGGATAAAGCCGCTACCTACTATGAAAACGAAGTGGACGATGCCGTGGACAATA
TGACGGCATTAATTGAGCCTTTTATTATGTCTTTCTTGGGCGTGGTGATTGGTGGCTTGATCATCGCCATGTACCTGCCA
ATCTTTATGATGGGCAGCGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222FJK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.546

98.775

0.598
  pilC Acinetobacter baumannii D1279779

58.049

100

0.583
  pilC Acinetobacter baylyi ADP1

57.598

100

0.576
  pilC Legionella pneumophila strain ERS1305867

53.383

97.794

0.522
  pilG Neisseria gonorrhoeae MS11

43.921

98.775

0.434
  pilG Neisseria meningitidis 44/76-A

43.672

98.775

0.431
  pilC Vibrio cholerae strain A1552

41.32

100

0.414
  pilC Vibrio campbellii strain DS40M4

41.191

98.775

0.407
  pilC Thermus thermophilus HB27

36.567

98.529

0.36

Multiple sequence alignment