Detailed information NTG0240366

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: C7M29_RS12120
• Genome accession: NZ_CP028217
• Coordinates: 2354754..2356019 (-)
• Length: 421 a.a.
• NCBI ID: WP_004398500.1
• Uniprot ID: O34528
• Organism: Bacillus subtilis strain SRCM102751
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2349754..2361019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7M29_RS12095 (C7M29_02379)	yrzK	2349997..2350167 (+)	171	WP_004399157.1	YrzK family protein	-
C7M29_RS12100 (C7M29_02380)	hisS	2350549..2351823 (+)	1275	WP_161476827.1	histidine--tRNA ligase	-
C7M29_RS12105 (C7M29_02381)	aspS	2351837..2353615 (+)	1779	WP_161476828.1	aspartate--tRNA ligase	-
C7M29_RS12115 (C7M29_02382)	tcdA	2353950..2354714 (+)	765	WP_003229763.1	tRNA threonylcarbamoyladenosine dehydratase	-
C7M29_RS12120 (C7M29_02383)	rarA	2354754..2356019 (-)	1266	WP_004398500.1	replication-associated recombination protein A	Machinery gene
C7M29_RS12125 (C7M29_02384)	cymR	2356222..2356638 (+)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
C7M29_RS12130 (C7M29_02385)	iscSA	2356657..2357799 (+)	1143	WP_003229769.1	cysteine desulfurase family protein	-
C7M29_RS12135 (C7M29_02386)	mnmA	2357827..2358942 (+)	1116	WP_046160682.1	tRNA 2-thiouridine(34) synthase MnmA	-
C7M29_RS12140 (C7M29_02387)	yrrB	2359028..2359648 (+)	621	WP_206697897.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46514.38 Da
• Isoelectric Point: 7.2043

>NTDB_id=240366 C7M29_RS12120 WP_004398500.1 2354754..2356019(-) (rarA) [Bacillus subtilis strain SRCM102751]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=240366 C7M29_RS12120 WP_004398500.1 2354754..2356019(-) (rarA) [Bacillus subtilis strain SRCM102751]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGAATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGAACTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCGATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAGGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGGGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACAGGAAAATTCGAATCCGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

3D structure

• AlphaFold DB: O34528

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	100	100	1