Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CHH28_RS09755 Genome accession   NZ_CP022530
Coordinates   2069036..2069854 (-) Length   272 a.a.
NCBI ID   WP_332881238.1    Uniprot ID   -
Organism   Bacterioplanes sanyensis strain NV9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064036..2074854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHH28_RS09730 (CHH28_09735) - 2064956..2065651 (+) 696 WP_094060130.1 transglutaminase-like cysteine peptidase -
  CHH28_RS09735 (CHH28_09740) - 2065676..2067628 (+) 1953 WP_094060131.1 EAL domain-containing protein -
  CHH28_RS09740 (CHH28_09745) - 2067724..2068134 (+) 411 WP_094060132.1 copper chaperone PCu(A)C -
  CHH28_RS09745 (CHH28_09750) yacG 2068131..2068325 (-) 195 WP_094060133.1 DNA gyrase inhibitor YacG -
  CHH28_RS09750 (CHH28_09755) coaE 2068315..2068926 (-) 612 WP_094060134.1 dephospho-CoA kinase -
  CHH28_RS09755 (CHH28_09760) pilD 2069036..2069854 (-) 819 WP_332881238.1 A24 family peptidase Machinery gene
  CHH28_RS09760 (CHH28_09765) pilC 2069911..2071137 (-) 1227 WP_094060136.1 type II secretion system F family protein Machinery gene
  CHH28_RS09765 (CHH28_09770) pilB 2071202..2072890 (-) 1689 WP_094062036.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CHH28_RS20205 (CHH28_09775) pilA/pilA1 2073135..2073578 (-) 444 WP_094060137.1 pilin Machinery gene
  CHH28_RS09775 (CHH28_09780) nadC 2073867..2074721 (-) 855 WP_094060138.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 29778.57 Da        Isoelectric Point: 6.6888

>NTDB_id=240364 CHH28_RS09755 WP_332881238.1 2069036..2069854(-) (pilD) [Bacterioplanes sanyensis strain NV9]
MSLLVGSFLNVVILRLPIMLFRDWKRECAELDDNLPKHPALDDLDKPYNLVKPDSHCRNCLAPVKPWQNVPVISYLLLRG
KCASCGATIGWRYPAVEMTTALLSVAVAVYFPWGWPLAAMLIFTWLLVAMSVIDIDHQILPDSMTLGLMWIGLLLNTQAM
FVPLESAVLGAAAGYLSLWSVYWLFKLVTGKEGMGFGDFKLLAALGAWLGVSALPLIILLSSMVGAVVGIAGIMIMGRDK
NLPIPFGPYLAAAGWIAALWGTDITNWYLGTL

Nucleotide


Download         Length: 819 bp        

>NTDB_id=240364 CHH28_RS09755 WP_332881238.1 2069036..2069854(-) (pilD) [Bacterioplanes sanyensis strain NV9]
GTGAGTTTGCTCGTCGGCAGCTTTCTCAATGTGGTGATTCTGCGCTTGCCGATCATGCTGTTTCGCGATTGGAAACGTGA
GTGTGCCGAGCTGGATGACAATCTACCCAAGCATCCGGCTCTGGATGATTTGGACAAGCCGTACAATCTGGTCAAGCCAG
ATTCACACTGTCGCAACTGCCTGGCGCCGGTCAAGCCTTGGCAAAACGTGCCTGTGATCAGTTACTTGCTGCTGCGCGGT
AAATGTGCCAGCTGCGGGGCCACCATAGGCTGGCGTTACCCAGCGGTAGAAATGACTACCGCACTGTTGAGCGTCGCTGT
GGCCGTGTATTTTCCCTGGGGCTGGCCATTGGCCGCAATGTTGATCTTCACCTGGCTGTTGGTGGCGATGTCGGTGATTG
ATATCGATCATCAAATTCTGCCGGACAGCATGACACTGGGCCTGATGTGGATCGGCTTGCTGCTCAACACCCAAGCCATG
TTTGTCCCGCTGGAATCGGCCGTATTGGGCGCAGCCGCAGGCTACTTGTCTCTGTGGTCCGTGTACTGGCTGTTTAAGCT
GGTCACCGGCAAAGAAGGCATGGGATTTGGCGATTTCAAATTATTAGCGGCCCTGGGAGCTTGGTTAGGCGTCAGCGCCC
TACCCTTGATCATACTGCTGTCATCGATGGTGGGCGCAGTGGTTGGTATTGCTGGCATTATGATCATGGGCCGCGATAAA
AACCTGCCGATTCCCTTTGGGCCCTACCTAGCGGCGGCAGGCTGGATTGCTGCGCTGTGGGGCACCGACATCACCAACTG
GTACTTGGGCACTCTCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(2-111)

Type IV leader peptidase family (Peptidase_A24)

(121-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

50

99.265

0.496
  pilD Acinetobacter nosocomialis M2

49.63

99.265

0.493
  pilD Neisseria gonorrhoeae MS11

52.344

94.118

0.493
  pilD Vibrio campbellii strain DS40M4

49.446

99.632

0.493
  pilD Vibrio cholerae strain A1552

48.897

100

0.489

Multiple sequence alignment