Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   B2G65_RS05655 Genome accession   NZ_CP022354
Coordinates   1064251..1064643 (-) Length   130 a.a.
NCBI ID   WP_029713971.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain GUR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1037408..1075597 1064251..1064643 within 0


Gene organization within MGE regions


Location: 1037408..1075597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G65_RS05480 (B2G65_05480) prx 1037408..1037590 (-) 183 WP_029714017.1 hypothetical protein Regulator
  B2G65_RS05485 (B2G65_05485) - 1037789..1037998 (-) 210 WP_011054450.1 helix-turn-helix domain-containing protein -
  B2G65_RS10010 - 1038152..1038298 (+) 147 WP_011054449.1 hypothetical protein -
  B2G65_RS05490 (B2G65_05490) - 1038439..1038690 (+) 252 WP_011054448.1 hypothetical protein -
  B2G65_RS05495 (B2G65_05495) - 1038954..1039193 (+) 240 WP_011054447.1 hypothetical protein -
  B2G65_RS05500 (B2G65_05500) - 1039251..1039607 (+) 357 WP_011054446.1 hypothetical protein -
  B2G65_RS05505 (B2G65_05505) - 1039723..1040928 (-) 1206 WP_029714018.1 glucosaminidase domain-containing protein -
  B2G65_RS05510 (B2G65_05510) - 1041051..1041278 (-) 228 WP_029714020.1 phage holin -
  B2G65_RS05515 (B2G65_05515) - 1041275..1041547 (-) 273 WP_093974706.1 hypothetical protein -
  B2G65_RS05520 (B2G65_05520) - 1041559..1042197 (-) 639 WP_046735270.1 hypothetical protein -
  B2G65_RS05525 (B2G65_05525) - 1042200..1042628 (-) 429 WP_002988448.1 DUF1617 family protein -
  B2G65_RS05530 (B2G65_05530) - 1042640..1044544 (-) 1905 WP_011017395.1 gp58-like family protein -
  B2G65_RS05535 (B2G65_05535) - 1044554..1045560 (-) 1007 Protein_1030 hyaluronoglucosaminidase -
  B2G65_RS05540 (B2G65_05540) - 1045557..1047608 (-) 2052 WP_011054440.1 phage tail spike protein -
  B2G65_RS05545 (B2G65_05545) - 1047605..1048375 (-) 771 WP_029713951.1 distal tail protein Dit -
  B2G65_RS05550 (B2G65_05550) - 1048388..1052488 (-) 4101 WP_093974708.1 phage tail tape measure protein -
  B2G65_RS05555 (B2G65_05555) gpG 1052713..1053015 (-) 303 WP_029713954.1 phage tail assembly chaperone G -
  B2G65_RS05560 (B2G65_05560) - 1053111..1053695 (-) 585 WP_029713955.1 major tail protein -
  B2G65_RS05565 (B2G65_05565) - 1053707..1054087 (-) 381 WP_029713956.1 hypothetical protein -
  B2G65_RS05570 (B2G65_05570) - 1054080..1054478 (-) 399 WP_011017387.1 HK97 gp10 family phage protein -
  B2G65_RS05575 (B2G65_05575) - 1054480..1054842 (-) 363 WP_029713957.1 hypothetical protein -
  B2G65_RS05580 (B2G65_05580) - 1054835..1055143 (-) 309 WP_029713958.1 hypothetical protein -
  B2G65_RS10015 - 1055143..1055316 (-) 174 WP_164875336.1 hypothetical protein -
  B2G65_RS05585 (B2G65_05585) - 1055327..1056460 (-) 1134 WP_093974710.1 phage major capsid protein -
  B2G65_RS05590 (B2G65_05590) - 1056477..1057283 (-) 807 WP_029713960.1 head maturation protease, ClpP-related -
  B2G65_RS05595 (B2G65_05595) - 1057264..1058451 (-) 1188 WP_027970293.1 phage portal protein -
  B2G65_RS05600 (B2G65_05600) - 1058632..1060362 (-) 1731 WP_093974712.1 terminase large subunit domain-containing protein -
  B2G65_RS05605 (B2G65_05605) - 1060375..1060692 (-) 318 WP_029713962.1 P27 family phage terminase small subunit -
  B2G65_RS05610 (B2G65_05610) - 1060835..1061140 (-) 306 WP_186433262.1 HNH endonuclease -
  B2G65_RS05615 (B2G65_05615) - 1061133..1061519 (-) 387 WP_093974962.1 hypothetical protein -
  B2G65_RS05625 (B2G65_05625) - 1061761..1062006 (-) 246 WP_029713966.1 hypothetical protein -
  B2G65_RS05630 (B2G65_05630) - 1062030..1062326 (-) 297 WP_029713967.1 hypothetical protein -
  B2G65_RS05635 (B2G65_05635) - 1062481..1063056 (-) 576 WP_029713968.1 site-specific integrase -
  B2G65_RS05640 (B2G65_05640) - 1063214..1063615 (-) 402 WP_027970299.1 hypothetical protein -
  B2G65_RS05645 (B2G65_05645) - 1063618..1063962 (-) 345 WP_029713969.1 helix-turn-helix domain-containing protein -
  B2G65_RS05650 (B2G65_05650) - 1063959..1064237 (-) 279 WP_029713970.1 hypothetical protein -
  B2G65_RS05655 (B2G65_05655) ssbA 1064251..1064643 (-) 393 WP_029713971.1 single-stranded DNA-binding protein Machinery gene
  B2G65_RS05660 (B2G65_05660) - 1064640..1064861 (-) 222 WP_003057301.1 hypothetical protein -
  B2G65_RS05665 (B2G65_05665) - 1064854..1065186 (-) 333 WP_029713972.1 hypothetical protein -
  B2G65_RS05670 (B2G65_05670) - 1065179..1065418 (-) 240 WP_029713973.1 DUF3310 domain-containing protein -
  B2G65_RS05675 (B2G65_05675) - 1065541..1065846 (-) 306 WP_093974715.1 DUF1372 family protein -
  B2G65_RS05680 (B2G65_05680) - 1065843..1066334 (-) 492 WP_093974717.1 MazG-like family protein -
  B2G65_RS05685 (B2G65_05685) - 1066321..1066485 (-) 165 WP_153276856.1 hypothetical protein -
  B2G65_RS05690 (B2G65_05690) - 1066496..1066726 (-) 231 WP_029713977.1 hypothetical protein -
  B2G65_RS05695 (B2G65_05695) - 1066726..1067547 (-) 822 WP_029713978.1 ATP-binding protein -
  B2G65_RS05700 (B2G65_05700) - 1067548..1068294 (-) 747 WP_029713979.1 conserved phage C-terminal domain-containing protein -
  B2G65_RS05705 (B2G65_05705) dnaB 1068281..1069627 (-) 1347 WP_029713980.1 replicative DNA helicase -
  B2G65_RS05710 (B2G65_05710) - 1069614..1069802 (-) 189 WP_029713981.1 hypothetical protein -
  B2G65_RS05715 (B2G65_05715) - 1069957..1070214 (-) 258 WP_022554795.1 hypothetical protein -
  B2G65_RS10150 - 1070287..1070388 (-) 102 Protein_1067 XRE family transcriptional regulator -
  B2G65_RS05720 (B2G65_05720) - 1070471..1070677 (+) 207 WP_029713982.1 hypothetical protein -
  B2G65_RS05725 (B2G65_05725) - 1070674..1070886 (-) 213 WP_029713983.1 hypothetical protein -
  B2G65_RS05730 (B2G65_05730) - 1070961..1071680 (-) 720 WP_029713984.1 ORF6C domain-containing protein -
  B2G65_RS05735 (B2G65_05735) - 1071723..1071950 (-) 228 WP_029713985.1 hypothetical protein -
  B2G65_RS05740 (B2G65_05740) - 1072189..1072770 (-) 582 WP_029713986.1 hypothetical protein -
  B2G65_RS10020 (B2G65_05745) - 1072945..1073091 (-) 147 WP_022554802.1 hypothetical protein -
  B2G65_RS05750 (B2G65_05750) - 1073250..1074005 (+) 756 WP_093974719.1 helix-turn-helix domain-containing protein -
  B2G65_RS05755 (B2G65_05755) - 1074401..1075597 (+) 1197 WP_029713988.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14865.79 Da        Isoelectric Point: 6.9512

>NTDB_id=238693 B2G65_RS05655 WP_029713971.1 1064251..1064643(-) (ssbA) [Streptococcus pyogenes strain GUR]
MINNVVLIGRLTKDVELRYTPSQVACAQFTLAVNRNFKNQDGQKEADFINCVMWRQAAENLTNWTKKGHLIAITGRIQTR
NYENQQGQRVYVTEVVAESFQILEKRDKTANTNSLADTMPDYGPEPDLPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=238693 B2G65_RS05655 WP_029713971.1 1064251..1064643(-) (ssbA) [Streptococcus pyogenes strain GUR]
ATGATCAATAACGTTGTCCTGATTGGCCGCTTAACAAAAGATGTTGAGCTACGCTATACACCAAGTCAAGTAGCTTGCGC
ACAGTTTACTTTAGCAGTTAATCGTAATTTTAAAAATCAAGATGGGCAAAAAGAAGCTGATTTTATTAATTGTGTAATGT
GGCGACAAGCTGCTGAAAATTTAACAAATTGGACGAAAAAGGGCCATCTGATTGCGATAACAGGACGCATTCAGACCCGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTGGTTGCCGAAAGTTTTCAAATTTTAGAGAAGCGTGA
TAAAACAGCTAATACTAATAGCTTGGCAGATACCATGCCAGACTATGGACCAGAACCAGATTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.224

82.308

0.562
  ssb Latilactobacillus sakei subsp. sakei 23K

65.138

83.846

0.546
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.97

100

0.477
  ssbA Streptococcus mutans UA159

44.444

100

0.462
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.212

86.923

0.454
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.939

100

0.446
  ssbB/cilA Streptococcus mitis SK321

43.182

100

0.438
  ssbB/cilA Streptococcus mitis NCTC 12261

43.182

100

0.438
  ssbB/cilA Streptococcus pneumoniae Rx1

43.182

100

0.438
  ssbB/cilA Streptococcus pneumoniae D39

43.182

100

0.438
  ssbB/cilA Streptococcus pneumoniae R6

43.182

100

0.438
  ssbB Lactococcus lactis subsp. cremoris KW2

41.085

99.231

0.408

Multiple sequence alignment