Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   CDV25_RS06080 Genome accession   NZ_CP021886
Coordinates   1235085..1235330 (-) Length   81 a.a.
NCBI ID   WP_108911189.1    Uniprot ID   A0A2U8FEX7
Organism   Helicobacter apodemus strain SCJK1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230085..1240330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDV25_RS10595 - 1231820..1232887 (-) 1068 WP_239056325.1 divergent polysaccharide deacetylase family protein -
  CDV25_RS06065 (CDV25_06040) minE 1232877..1233110 (-) 234 WP_034552979.1 cell division topological specificity factor MinE -
  CDV25_RS06070 (CDV25_06045) minD 1233107..1233907 (-) 801 WP_108911187.1 septum site-determining protein MinD -
  CDV25_RS06075 (CDV25_06050) ilvC 1233989..1235014 (-) 1026 WP_108911188.1 ketol-acid reductoisomerase -
  CDV25_RS06080 (CDV25_06055) Cj0011c 1235085..1235330 (-) 246 WP_108911189.1 helix-hairpin-helix domain-containing protein Machinery gene
  CDV25_RS06085 (CDV25_06060) - 1235441..1236946 (-) 1506 WP_108911190.1 YifB family Mg chelatase-like AAA ATPase -
  CDV25_RS06090 (CDV25_06065) def 1236937..1237455 (-) 519 WP_108911191.1 peptide deformylase -
  CDV25_RS06095 (CDV25_06070) - 1237455..1238507 (-) 1053 WP_162550455.1 diguanylate cyclase -
  CDV25_RS06100 (CDV25_06075) clpP 1238522..1239112 (-) 591 WP_108911193.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 9153.67 Da        Isoelectric Point: 6.3485

>NTDB_id=234412 CDV25_RS06080 WP_108911189.1 1235085..1235330(-) (Cj0011c) [Helicobacter apodemus strain SCJK1]
MKLLATFFLMVSFLFGGVDLNTASKEELMKINGIGEAKAQAIIDYREKQPFVSVDELEKVKGFGKKNVEKIRDQISVENK
E

Nucleotide


Download         Length: 246 bp        

>NTDB_id=234412 CDV25_RS06080 WP_108911189.1 1235085..1235330(-) (Cj0011c) [Helicobacter apodemus strain SCJK1]
ATGAAATTATTGGCCACATTCTTTTTAATGGTTTCGTTTTTGTTTGGTGGAGTAGATTTAAACACTGCTAGTAAAGAAGA
GTTGATGAAAATTAATGGTATAGGTGAGGCAAAGGCTCAAGCTATTATTGATTATCGAGAAAAGCAACCTTTTGTGTCTG
TGGATGAGTTAGAAAAAGTTAAAGGCTTTGGTAAGAAAAATGTAGAAAAAATACGAGACCAAATAAGTGTTGAAAATAAA
GAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(16-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8FEX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.545

95.062

0.519
  comE Neisseria gonorrhoeae MS11

44.444

100

0.444
  comE Neisseria gonorrhoeae MS11

44.444

100

0.444
  comE Neisseria gonorrhoeae MS11

44.444

100

0.444
  comE Neisseria gonorrhoeae MS11

44.444

100

0.444
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.613

76.543

0.395
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

51.613

76.543

0.395
  comEA/celA/cilE Streptococcus pneumoniae Rx1

51.613

76.543

0.395
  comEA/celA/cilE Streptococcus pneumoniae D39

51.613

76.543

0.395
  comEA/celA/cilE Streptococcus pneumoniae R6

51.613

76.543

0.395
  comEA Lactococcus lactis subsp. cremoris KW2

50

76.543

0.383
  comEA/celA/cilE Streptococcus mitis SK321

50

76.543

0.383
  comEA/comE1 Glaesserella parasuis strain SC1401

49.206

77.778

0.383
  comEA Staphylococcus aureus N315

49.18

75.309

0.37
  comEA Staphylococcus aureus MW2

49.18

75.309

0.37

Multiple sequence alignment