Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXX15_RS02655 Genome accession   NZ_CP025847
Coordinates   566097..566612 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 602354     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 561097..571612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX15_RS02630 ygaZ 561496..562233 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CXX15_RS02635 ygaH 562223..562558 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CXX15_RS02640 emrR 562649..563179 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXX15_RS02645 emrA 563306..564478 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXX15_RS02650 emrB 564495..566033 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXX15_RS02655 luxS 566097..566612 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CXX15_RS02660 gshA 566762..568318 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  CXX15_RS02665 yqaA 568391..568819 (-) 429 WP_001287457.1 YqaA family protein -
  CXX15_RS02670 yqaB 568816..569382 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXX15_RS02700 csrA 570840..571025 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=220076 CXX15_RS02655 WP_001130210.1 566097..566612(-) (luxS) [Escherichia coli strain 602354]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=220076 CXX15_RS02655 WP_001130210.1 566097..566612(-) (luxS) [Escherichia coli strain 602354]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment