Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   OTEC02_RS01585 Genome accession   NZ_CP020015
Coordinates   331441..331881 (+) Length   146 a.a.
NCBI ID   WP_081172667.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326441..336881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS01565 (OTEC02_01565) - 327822..328709 (+) 888 WP_002117027.1 metal-dependent hydrolase -
  OTEC02_RS01570 (OTEC02_01570) - 328840..329430 (+) 591 WP_002117090.1 LemA family protein -
  OTEC02_RS01575 (OTEC02_01575) - 329455..330537 (+) 1083 WP_081172665.1 TPM domain-containing protein -
  OTEC02_RS01580 (OTEC02_01580) - 330531..331091 (+) 561 WP_081172666.1 TPM domain-containing protein -
  OTEC02_RS01585 (OTEC02_01585) comP 331441..331881 (+) 441 WP_081172667.1 pilin Machinery gene
  OTEC02_RS01590 (OTEC02_01590) - 331939..333252 (+) 1314 WP_081172668.1 O-antigen ligase family protein -
  OTEC02_RS01595 (OTEC02_01595) - 333356..334984 (+) 1629 WP_081172669.1 PglL family O-oligosaccharyltransferase -
  OTEC02_RS01600 (OTEC02_01600) bfr 335029..335493 (-) 465 WP_016143648.1 bacterioferritin -
  OTEC02_RS01605 (OTEC02_01605) - 335737..335931 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  OTEC02_RS01610 (OTEC02_01610) - 336151..336534 (-) 384 WP_002116996.1 RidA family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14986.09 Da        Isoelectric Point: 4.6894

>NTDB_id=220076 OTEC02_RS01585 WP_081172667.1 331441..331881(+) (comP) [Acinetobacter lactucae strain OTEC-02]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYMVRSKVTEGLNLASSYKTTIAENAGNGAANLAVGVPNFAATENVASI
TPDGTTGKIEILYTDKAKGLTLTPYDGAEGGTAIAAGTVPTNQITWVCTVDSAANAKYVPSNCRGS

Nucleotide


Download         Length: 441 bp        

>NTDB_id=220076 OTEC02_RS01585 WP_081172667.1 331441..331881(+) (comP) [Acinetobacter lactucae strain OTEC-02]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATCGCGAT
TCCAGCTTATCAAGATTATATGGTTCGTTCAAAAGTAACAGAAGGTTTGAATTTAGCTTCATCTTATAAGACTACAATTG
CTGAAAATGCTGGAAATGGTGCTGCGAATTTAGCAGTAGGAGTTCCTAACTTTGCGGCAACAGAAAATGTAGCATCGATC
ACGCCAGATGGGACTACAGGAAAAATTGAAATTCTATATACAGATAAAGCAAAAGGTTTAACTTTAACTCCATATGACGG
CGCTGAAGGTGGTACAGCGATTGCTGCTGGGACTGTACCAACAAACCAAATTACTTGGGTATGTACTGTAGATTCAGCTG
CTAATGCTAAATATGTACCATCAAATTGCCGTGGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

50.307

100

0.562
  pilA Ralstonia pseudosolanacearum GMI1000

48.734

100

0.527
  pilA2 Legionella pneumophila strain ERS1305867

51.37

100

0.514
  pilA2 Legionella pneumophila str. Paris

51.02

100

0.514
  pilA/pilA1 Eikenella corrodens VA1

40.741

100

0.452
  pilA Acinetobacter baumannii strain A118

42.568

100

0.432
  pilA Pseudomonas aeruginosa PAK

36.364

100

0.411
  pilA Vibrio cholerae strain A1552

35.484

100

0.377
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

35.484

100

0.377
  pilA Vibrio cholerae C6706

35.484

100

0.377
  pilA/pilAII Pseudomonas stutzeri DSM 10701

35.811

100

0.363

Multiple sequence alignment