Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   BVL33_RS02890 Genome accession   NZ_CP019041
Coordinates   599978..600415 (+) Length   145 a.a.
NCBI ID   WP_418133862.1    Uniprot ID   -
Organism   Acinetobacter junii strain 65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 594978..605415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL33_RS02860 (BVL33_02860) - 595425..596015 (+) 591 WP_004678771.1 LemA family protein -
  BVL33_RS02865 (BVL33_02865) - 596049..597095 (+) 1047 WP_004964581.1 TPM domain-containing protein -
  BVL33_RS02870 (BVL33_02870) - 597089..597649 (+) 561 WP_075696031.1 TPM domain-containing protein -
  BVL33_RS02875 (BVL33_02875) - 597708..598757 (+) 1050 WP_004678766.1 AAA family ATPase -
  BVL33_RS02880 (BVL33_02880) - 599119..599583 (+) 465 WP_005328321.1 hypothetical protein -
  BVL33_RS02890 (BVL33_02890) pilA2 599978..600415 (+) 438 WP_418133862.1 pilin Machinery gene
  BVL33_RS02895 (BVL33_02895) - 600419..601693 (+) 1275 WP_075696034.1 O-antigen ligase family protein -
  BVL33_RS02900 (BVL33_02900) tfpZ 601717..602451 (+) 735 WP_075696035.1 TfpX/TfpZ family type IV pilin accessory protein -
  BVL33_RS02905 (BVL33_02905) - 602529..604160 (+) 1632 WP_075696036.1 PglL family O-oligosaccharyltransferase -
  BVL33_RS02910 (BVL33_02910) bfr 604210..604674 (-) 465 WP_075696037.1 heteropolymeric bacterioferritin subunit Bfr -
  BVL33_RS02915 (BVL33_02915) - 604898..605092 (-) 195 WP_075696038.1 bacterioferritin-associated ferredoxin -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15081.36 Da        Isoelectric Point: 6.2196

>NTDB_id=212804 BVL33_RS02890 WP_418133862.1 599978..600415(+) (pilA2) [Acinetobacter junii strain 65]
MQKGFTLIELMIVVAIIGILAAIAIPAYQDYTTRAKMSEVVNFAAAAKSAVSECAISTGTLSDCNTNAKAGLEAAADLKS
TYVESVTVGNNGVITLEIKGTNVTALDAANLTMTPTLDNKAGVSWVCKISSNTLNKYVPANCRST

Nucleotide


Download         Length: 438 bp        

>NTDB_id=212804 BVL33_RS02890 WP_418133862.1 599978..600415(+) (pilA2) [Acinetobacter junii strain 65]
ATGCAAAAGGGTTTTACTCTTATCGAATTGATGATTGTTGTCGCTATTATTGGTATTTTGGCTGCAATTGCGATTCCTGC
GTATCAAGACTATACGACGCGTGCGAAAATGAGTGAAGTAGTAAACTTTGCTGCCGCAGCTAAATCAGCTGTAAGCGAAT
GTGCTATTTCAACTGGTACATTATCTGATTGTAATACTAACGCTAAAGCTGGACTTGAAGCAGCTGCTGATTTGAAGTCT
ACTTATGTTGAATCGGTAACAGTTGGTAATAATGGTGTTATTACTTTAGAAATTAAAGGAACAAATGTAACAGCTCTAGA
TGCAGCAAACTTGACGATGACACCAACATTGGATAATAAAGCAGGTGTTTCATGGGTTTGTAAAATTTCATCTAATACAC
TTAATAAGTATGTACCTGCTAACTGTCGTTCAACCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Pilin (bacterial filament) (Pilin)

(33-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

51.408

97.931

0.503
  pilA2 Legionella pneumophila str. Paris

51.408

97.931

0.503
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

38.503

100

0.497
  comP Acinetobacter baylyi ADP1

45.638

100

0.469
  pilA Ralstonia pseudosolanacearum GMI1000

38.69

100

0.448
  pilA Haemophilus influenzae Rd KW20

42.759

100

0.428
  pilE Neisseria gonorrhoeae strain FA1090

38.994

100

0.428
  pilE Neisseria gonorrhoeae MS11

38.75

100

0.428
  pilA Haemophilus influenzae 86-028NP

42.657

98.621

0.421
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.456

100

0.4
  pilA Acinetobacter baumannii strain A118

38.776

100

0.393
  pilA Glaesserella parasuis strain SC1401

41.86

88.966

0.372

Multiple sequence alignment