Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | XF_RS11065 | Genome accession | NC_002488 |
| Coordinates | 2414710..2415156 (+) | Length | 148 a.a. |
| NCBI ID | WP_010894963.1 | Uniprot ID | Q9PAH6 |
| Organism | Xylella fastidiosa 9a5c | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2409710..2420156
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XF_RS11040 (XF2536) | coaE | 2409818..2410441 (-) | 624 | WP_023907058.1 | dephospho-CoA kinase | - |
| XF_RS11045 (XF2537) | pilD | 2410453..2411316 (-) | 864 | WP_010894958.1 | prepilin peptidase | Machinery gene |
| XF_RS11050 (XF2538) | pilC | 2411323..2412525 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| XF_RS11055 (XF2539) | pilA/pilAI | 2412967..2413413 (+) | 447 | WP_010894960.1 | pilin | Machinery gene |
| XF_RS11065 (XF2542) | pilA/pilAI | 2414710..2415156 (+) | 447 | WP_010894963.1 | pilin | Machinery gene |
| XF_RS11070 (XF2543) | - | 2415594..2415944 (-) | 351 | WP_023907062.1 | hypothetical protein | - |
| XF_RS11075 (XF2544) | pilB | 2415976..2417709 (+) | 1734 | WP_010894965.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XF_RS11080 (XF2545) | - | 2417803..2419215 (-) | 1413 | WP_031338065.1 | sigma-54-dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15034.41 Da Isoelectric Point: 8.1156
>NTDB_id=21144 XF_RS11065 WP_010894963.1 2414710..2415156(+) (pilA/pilAI) [Xylella fastidiosa 9a5c]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQIAAALAEITPGKVQAEIRIADGQAATTPNAIGLRAPTPRCGT
IVVDIAPSAASAITCTMIGNAQVNNQTITLTRIADNNAGQGGVNTGGNWTCTTTAPAALTPAGCTGVS
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQIAAALAEITPGKVQAEIRIADGQAATTPNAIGLRAPTPRCGT
IVVDIAPSAASAITCTMIGNAQVNNQTITLTRIADNNAGQGGVNTGGNWTCTTTAPAALTPAGCTGVS
Nucleotide
Download Length: 447 bp
>NTDB_id=21144 XF_RS11065 WP_010894963.1 2414710..2415156(+) (pilA/pilAI) [Xylella fastidiosa 9a5c]
ATGAAAAAGCAACAAGGTTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATTGCCATCCTCGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAATCGCAGCAGCGCTGGCCGAGATCACACCGGGCAAGGTACAAGCCG
AAATCCGTATTGCTGATGGACAGGCTGCAACCACTCCTAACGCTATCGGACTACGCGCCCCGACCCCTCGTTGCGGCACC
ATTGTGGTCGACATCGCACCTTCTGCCGCTAGCGCAATCACATGTACGATGATTGGTAATGCTCAGGTCAACAATCAAAC
TATCACCTTGACTCGCATCGCTGATAACAACGCAGGCCAAGGTGGCGTCAATACTGGGGGGAACTGGACCTGTACCACAA
CCGCGCCTGCGGCGTTAACTCCAGCAGGCTGTACTGGAGTTAGTTAA
ATGAAAAAGCAACAAGGTTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATTGCCATCCTCGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAATCGCAGCAGCGCTGGCCGAGATCACACCGGGCAAGGTACAAGCCG
AAATCCGTATTGCTGATGGACAGGCTGCAACCACTCCTAACGCTATCGGACTACGCGCCCCGACCCCTCGTTGCGGCACC
ATTGTGGTCGACATCGCACCTTCTGCCGCTAGCGCAATCACATGTACGATGATTGGTAATGCTCAGGTCAACAATCAAAC
TATCACCTTGACTCGCATCGCTGATAACAACGCAGGCCAAGGTGGCGTCAATACTGGGGGGAACTGGACCTGTACCACAA
CCGCGCCTGCGGCGTTAACTCCAGCAGGCTGTACTGGAGTTAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.27 |
100 |
0.453 |
| pilA | Pseudomonas aeruginosa PAK |
41.509 |
100 |
0.446 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.466 |
98.649 |
0.419 |
| pilA | Acinetobacter baumannii strain A118 |
41.216 |
100 |
0.412 |
| pilA | Vibrio cholerae strain A1552 |
39.869 |
100 |
0.412 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.869 |
100 |
0.412 |
| pilA | Vibrio cholerae C6706 |
39.869 |
100 |
0.412 |
| pilA2 | Legionella pneumophila str. Paris |
39.726 |
98.649 |
0.392 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.726 |
98.649 |
0.392 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.926 |
100 |
0.392 |
| comP | Acinetobacter baylyi ADP1 |
36.538 |
100 |
0.385 |