Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NGO_RS02330 Genome accession   NC_002946
Coordinates   447238..447903 (+) Length   221 a.a.
NCBI ID   WP_010951044.1    Uniprot ID   Q5F9E6
Organism   Neisseria gonorrhoeae FA 1090     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442238..452903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGO_RS02300 (NGO_02385) cysT 442362..443191 (-) 830 Protein_452 sulfate ABC transporter permease subunit CysT -
  NGO_RS02305 (NGO0448) - 443377..443709 (+) 333 WP_003687908.1 hypothetical protein -
  NGO_RS02310 (NGO0449) - 444039..444548 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NGO_RS02315 (NGO_02400) - 444778..445360 (-) 583 Protein_455 superoxide dismutase -
  NGO_RS02325 (NGO0451) dnaB 445524..446930 (+) 1407 WP_010951043.1 replicative DNA helicase -
  NGO_RS02330 (NGO0452) pilH 447238..447903 (+) 666 WP_010951044.1 GspH/FimT family pseudopilin Machinery gene
  NGO_RS02335 (NGO0453) pilV 447935..448546 (+) 612 WP_010951045.1 type IV pilus modification protein PilV Machinery gene
  NGO_RS02340 (NGO0454) pilJ 448543..449523 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  NGO_RS02345 (NGO0455) pilK 449502..450113 (+) 612 WP_010951047.1 pilus assembly PilX family protein Machinery gene
  NGO_RS02350 (NGO0456) pilL 450115..450588 (+) 474 WP_025456309.1 PilX family type IV pilin Machinery gene
  NGO_RS02355 (NGO0457) - 450658..450966 (-) 309 WP_010951048.1 AzlD family protein -
  NGO_RS02360 (NGO_02440) - 450963..451674 (-) 712 Protein_463 AzlC family ABC transporter permease -
  NGO_RS02365 (NGO0459) dut 451840..452292 (+) 453 WP_010951049.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24687.02 Da        Isoelectric Point: 8.6176

>NTDB_id=21144 NGO_RS02330 WP_010951044.1 447238..447903(+) (pilH) [Neisseria gonorrhoeae FA 1090]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNGNKEYDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQHLTERSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=21144 NGO_RS02330 WP_010951044.1 447238..447903(+) (pilH) [Neisseria gonorrhoeae FA 1090]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGAATATGACGGCGA
TGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F9E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.498

100

0.905

Multiple sequence alignment