Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NGO_RS02335 Genome accession   NC_002946
Coordinates   447935..448546 (+) Length   203 a.a.
NCBI ID   WP_010951045.1    Uniprot ID   Q5F9E5
Organism   Neisseria gonorrhoeae FA 1090     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 442935..453546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGO_RS02305 (NGO0448) - 443377..443709 (+) 333 WP_003687908.1 hypothetical protein -
  NGO_RS02310 (NGO0449) - 444039..444548 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NGO_RS02315 (NGO_02400) - 444778..445360 (-) 583 Protein_455 superoxide dismutase -
  NGO_RS02325 (NGO0451) dnaB 445524..446930 (+) 1407 WP_010951043.1 replicative DNA helicase -
  NGO_RS02330 (NGO0452) pilH 447238..447903 (+) 666 WP_010951044.1 GspH/FimT family pseudopilin Machinery gene
  NGO_RS02335 (NGO0453) pilV 447935..448546 (+) 612 WP_010951045.1 type IV pilus modification protein PilV Machinery gene
  NGO_RS02340 (NGO0454) pilJ 448543..449523 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  NGO_RS02345 (NGO0455) pilK 449502..450113 (+) 612 WP_010951047.1 pilus assembly PilX family protein Machinery gene
  NGO_RS02350 (NGO0456) pilL 450115..450588 (+) 474 WP_025456309.1 PilX family type IV pilin Machinery gene
  NGO_RS02355 (NGO0457) - 450658..450966 (-) 309 WP_010951048.1 AzlD family protein -
  NGO_RS02360 (NGO_02440) - 450963..451674 (-) 712 Protein_463 AzlC family ABC transporter permease -
  NGO_RS02365 (NGO0459) dut 451840..452292 (+) 453 WP_010951049.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22077.07 Da        Isoelectric Point: 4.6211

>NTDB_id=21145 NGO_RS02335 WP_010951045.1 447935..448546(+) (pilV) [Neisseria gonorrhoeae FA 1090]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTLSAVDGEFMLDAEKSKAQLAEEQLKRFSHELKNALPDAVAIHYAVCKDSSGDAPTLSDSGAFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=21145 NGO_RS02335 WP_010951045.1 447935..448546(+) (pilV) [Neisseria gonorrhoeae FA 1090]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGACAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACTATCAGCTGTGGATGGTGAGTTTATGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTCATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGACAGCGGTGCTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F9E5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.372

100

0.911
  pilI Neisseria gonorrhoeae MS11

83.744

100

0.837
  pilV Neisseria gonorrhoeae MS11

83.744

100

0.837

Multiple sequence alignment